Subcellular Localization
min:
: max
Winner_takes_all: unclear, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 4
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
unclear: 26455813 |
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g008860.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26910.1 | Solyc07g008860.2.1 | AT1G71840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006183 | Potato | cytosol | 79.48 | 99.45 |
| Solyc06g082670.2.1 | Tomato | plastid | 91.7 | 95.89 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 14.41 | 94.29 |
| KRH72557 | Soybean | nucleus | 88.65 | 91.44 |
| KRH16949 | Soybean | nucleus | 88.65 | 91.44 |
| KRH64232 | Soybean | nucleus | 88.65 | 91.03 |
| KRH53698 | Soybean | cytosol | 88.65 | 91.03 |
| EER93866 | Sorghum | cytosol | 86.9 | 90.45 |
| Zm00001d033128_P001 | Maize | plasma membrane, plastid | 86.46 | 90.0 |
| TraesCS1D01G114100.1 | Wheat | cytosol, mitochondrion | 86.03 | 89.95 |
| TraesCS1B01G132700.1 | Wheat | cytosol, mitochondrion | 86.03 | 89.95 |
| TraesCS1A01G112500.1 | Wheat | nucleus | 86.03 | 89.95 |
| GSMUA_Achr10P... | Banana | cytosol | 86.9 | 88.84 |
| Os05t0169100-01 | Rice | nucleus, plastid | 84.28 | 88.13 |
| TraesCS4A01G204800.1 | Wheat | plastid | 82.97 | 87.56 |
| GSMUA_Achr8P01550_001 | Banana | cytosol, mitochondrion | 85.59 | 87.11 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 82.53 | 87.1 |
| EES06560 | Sorghum | cytosol | 85.15 | 87.05 |
| TraesCS4D01G105600.1 | Wheat | cytosol, mitochondrion | 82.1 | 86.64 |
| CDX81630 | Canola | cytosol | 68.56 | 85.79 |
| CDX96861 | Canola | cytosol | 82.1 | 85.45 |
| Bra016706.1-P | Field mustard | cytosol | 68.12 | 85.25 |
| GSMUA_Achr6P15860_001 | Banana | mitochondrion | 55.46 | 85.23 |
| AT1G26910.1 | Thale cress | mitochondrion | 82.1 | 85.07 |
| CDX84036 | Canola | cytosol, mitochondrion | 81.66 | 85.0 |
| AT1G14320.1 | Thale cress | mitochondrion | 81.66 | 85.0 |
| CDY49095 | Canola | mitochondrion | 81.66 | 85.0 |
| CDY28582 | Canola | cytosol, mitochondrion | 81.66 | 84.62 |
| CDY44087 | Canola | cytosol, mitochondrion | 81.66 | 84.62 |
| CDY38756 | Canola | mitochondrion | 81.22 | 84.55 |
| Os11t0220800-01 | Rice | nucleus | 82.53 | 84.38 |
| AT1G66580.1 | Thale cress | cytosol, mitochondrion | 80.79 | 83.71 |
| CDY62060 | Canola | mitochondrion | 80.79 | 83.71 |
| CDY48394 | Canola | cytosol | 66.81 | 83.15 |
| Bra003984.1-P | Field mustard | cytosol | 66.81 | 83.15 |
| Solyc06g082650.2.1 | Tomato | nucleus | 74.24 | 82.52 |
| Bra026839.1-P | Field mustard | mitochondrion | 41.48 | 79.83 |
| HORVU4Hr1G016190.4 | Barley | extracellular, golgi | 69.0 | 78.61 |
| Bra019662.1-P | Field mustard | mitochondrion | 40.61 | 78.15 |
| Bra007877.1-P | Field mustard | mitochondrion | 40.61 | 77.5 |
| Bra016269.1-P | Field mustard | mitochondrion | 40.17 | 77.31 |
| CDY39324 | Canola | cytosol, mitochondrion | 81.66 | 76.95 |
| VIT_06s0004g08260.t01 | Wine grape | cytosol, mitochondrion | 72.49 | 75.8 |
| CDY33756 | Canola | cytosol | 82.1 | 75.5 |
| KRG98102 | Soybean | mitochondrion, plastid | 86.46 | 75.29 |
| KRH66434 | Soybean | cytosol, mitochondrion, plastid | 60.7 | 75.14 |
| VIT_01s0150g00580.t01 | Wine grape | endoplasmic reticulum | 88.21 | 74.81 |
| KRH65844 | Soybean | cytosol | 34.93 | 74.07 |
| KRG88858 | Soybean | cytosol | 59.83 | 73.66 |
| HORVU1Hr1G024710.4 | Barley | mitochondrion | 80.35 | 71.88 |
| CDY01747 | Canola | mitochondrion | 82.1 | 70.94 |
| GSMUA_Achr6P08650_001 | Banana | endoplasmic reticulum, extracellular | 32.31 | 62.71 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | GO:GO:0000027 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022625 |
| InterPro:IPR036920 | UniProt:K4C3D3 | PFAM:PF00252 | PIRSF:PIRSF005590 | ScanProsite:PS01257 | PANTHER:PTHR11726 |
| PANTHER:PTHR11726:SF17 | InterPro:Ribosomal_L10e | InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf | InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc06g007520.2 | EnsemblPlants:Solyc06g007520.2.1 | TIGRFAMs:TIGR00279 | UniParc:UPI000276611E | : |
Description
No Description!
Coordinates
chr6:+:1513302..1514864
Molecular Weight (calculated)
25989.0 Da
IEP (calculated)
11.100
GRAVY (calculated)
-0.380
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRLTTFLLF FVRPARCYRQ IKNKPYPKSR FCRGVPDPKI RIYDVGMKKK GVDEFPFCVH LVSWEKENVS SEALEAARIA CNKYMTKSAG KDAFHLRVRV
101: HPFHVLRINK MLSCAGADRL QTGMRGAFGK PQGVCARVAI GQVLLSVRCK DGNANHAQEA LRRAKFKFPG RQKIIVSRKW GFTKFSRTDY LKYKSENRIV
201: PDGVNAKLLG CHGRLAARQP GRAFLEAAN
101: HPFHVLRINK MLSCAGADRL QTGMRGAFGK PQGVCARVAI GQVLLSVRCK DGNANHAQEA LRRAKFKFPG RQKIIVSRKW GFTKFSRTDY LKYKSENRIV
201: PDGVNAKLLG CHGRLAARQP GRAFLEAAN
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q
Arabidopsis Description
RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.