Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G14320.1 | Thale cress | mitochondrion | 96.83 | 97.27 |
| AT1G66580.1 | Thale cress | cytosol, mitochondrion | 95.02 | 95.02 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 14.48 | 91.43 |
| Zm00001d033128_P001 | Maize | plasma membrane, plastid | 86.88 | 87.27 |
| EER93866 | Sorghum | cytosol | 86.43 | 86.82 |
| PGSC0003DMT400078129 | Potato | cytosol, mitochondrion | 85.97 | 86.76 |
| TraesCS4A01G204800.1 | Wheat | plastid | 84.62 | 86.18 |
| TraesCS1D01G114100.1 | Wheat | cytosol, mitochondrion | 85.07 | 85.84 |
| TraesCS1B01G132700.1 | Wheat | cytosol, mitochondrion | 85.07 | 85.84 |
| Solyc06g082670.2.1 | Tomato | plastid | 85.07 | 85.84 |
| TraesCS1A01G112500.1 | Wheat | nucleus | 85.07 | 85.84 |
| PGSC0003DMT400006183 | Potato | cytosol | 71.04 | 85.79 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 84.16 | 85.71 |
| TraesCS4D01G105600.1 | Wheat | cytosol, mitochondrion | 83.71 | 85.25 |
| GSMUA_Achr8P01550_001 | Banana | cytosol, mitochondrion | 85.97 | 84.44 |
| GSMUA_Achr10P... | Banana | cytosol | 85.52 | 84.38 |
| Os05t0169100-01 | Rice | nucleus, plastid | 83.26 | 84.02 |
| EES06560 | Sorghum | cytosol | 84.62 | 83.48 |
| Os11t0220800-01 | Rice | nucleus | 83.71 | 82.59 |
| Solyc06g007520.2.1 | Tomato | nucleus, unclear | 85.07 | 82.1 |
| Solyc06g082650.2.1 | Tomato | nucleus | 73.76 | 79.13 |
| GSMUA_Achr6P15860_001 | Banana | mitochondrion | 52.94 | 78.52 |
| HORVU4Hr1G016190.4 | Barley | extracellular, golgi | 68.33 | 75.12 |
| VIT_06s0004g08260.t01 | Wine grape | cytosol, mitochondrion | 73.3 | 73.97 |
| KRG98102 | Soybean | mitochondrion, plastid | 86.88 | 73.0 |
| VIT_01s0150g00580.t01 | Wine grape | endoplasmic reticulum | 88.24 | 72.22 |
| HORVU1Hr1G024710.4 | Barley | mitochondrion | 80.09 | 69.14 |
| GSMUA_Achr6P08650_001 | Banana | endoplasmic reticulum, extracellular | 31.67 | 59.32 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | EntrezGene:837036 | UniProt:A0A178WDE3 | ProteinID:AAD14497.1 |
| ProteinID:AEE30757.1 | ArrayExpress:AT1G26910 | EnsemblPlantsGene:AT1G26910 | RefSeq:AT1G26910 | TAIR:AT1G26910 | RefSeq:AT1G26910-TAIR-G |
| EnsemblPlants:AT1G26910.1 | TAIR:AT1G26910.1 | EMBL:AY087264 | Unigene:At.41167 | EMBL:BT024605 | GO:GO:0000027 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009536 |
| GO:GO:0009628 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010224 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | GO:GO:0032502 | InterPro:IPR036920 | RefSeq:NP_174013.1 |
| ProteinID:OAP16408.1 | PFAM:PF00252 | PIRSF:PIRSF005590 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS01257 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF22 | UniProt:Q08770 | UniProt:Q2HIH6 |
| Symbol:RPL10B | InterPro:Ribosomal_L10e | InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf | InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 |
| TIGRFAMs:TIGR00279 | UniParc:UPI000000142C | EMBL:Z15157 | EMBL:Z46696 | : | : |
Description
RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
Coordinates
chr1:+:9321650..9323028
Molecular Weight (calculated)
24910.6 Da
IEP (calculated)
11.083
GRAVY (calculated)
-0.473
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.