Factsheet for PGSC0003DMT400078129

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400073944

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	PGSC0003DMT400073944	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082670.2.1	Tomato	plastid	99.09	99.09
PGSC0003DMT400006183	Potato	cytosol	80.82	96.72
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	15.07	94.29
KRH64232	Soybean	nucleus	93.61	91.93
KRH53698	Soybean	cytosol	93.61	91.93
KRH72557	Soybean	nucleus	93.15	91.89
KRH16949	Soybean	nucleus	93.15	91.89
GSMUA_Achr10P...	Banana	cytosol	91.78	89.73
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	90.87	88.44
AT1G26910.1	Thale cress	mitochondrion	86.76	85.97
AT1G14320.1	Thale cress	mitochondrion	86.3	85.91
AT1G66580.1	Thale cress	cytosol, mitochondrion	86.3	85.52
CDY28582	Canola	cytosol, mitochondrion	86.3	85.52
CDY44087	Canola	cytosol, mitochondrion	86.3	85.52
CDX96861	Canola	cytosol	85.84	85.45
CDY38756	Canola	mitochondrion	85.84	85.45
CDX84036	Canola	cytosol, mitochondrion	85.39	85.0
CDY49095	Canola	mitochondrion	85.39	85.0
CDY62060	Canola	mitochondrion	85.39	84.62
GSMUA_Achr6P15860_001	Banana	mitochondrion	57.53	84.56
CDX81630	Canola	cytosol	70.32	84.15
Solyc06g082650.2.1	Tomato	nucleus	79.0	83.98
Bra016706.1-P	Field mustard	cytosol	69.86	83.61
CDY48394	Canola	cytosol	69.41	82.61
Bra003984.1-P	Field mustard	cytosol	69.41	82.61
Bra026839.1-P	Field mustard	mitochondrion	42.47	78.15
Bra007877.1-P	Field mustard	mitochondrion	42.47	77.5
Bra016269.1-P	Field mustard	mitochondrion	42.01	77.31
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	77.17	77.17
CDY39324	Canola	cytosol, mitochondrion	85.39	76.95
Bra019662.1-P	Field mustard	mitochondrion	41.55	76.47
KRG98102	Soybean	mitochondrion, plastid	90.41	75.29
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	92.69	75.19
KRH66434	Soybean	cytosol, mitochondrion, plastid	63.47	75.14
CDY33756	Canola	cytosol	85.39	75.1
KRG88858	Soybean	cytosol	62.56	73.66
KRH65844	Soybean	cytosol	36.07	73.15
CDY01747	Canola	mitochondrion	85.84	70.94
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	34.25	63.56
PGSC0003DMT400053166	Potato	cytosol	42.92	41.23

Protein Annotations

EntrezGene:102580084	MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	ProteinID:ABB17003	ProteinID:ABB17003.1
ProteinID:AFX66987	ProteinID:AFX66987.1	EMBL:DQ228354	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036920
EMBL:JX683423	UniProt:K7XKP4	RefSeq:NP_001275096.1	PFAM:PF00252	EnsemblPlantsGene:PGSC0003DMG400030386	PGSC:PGSC0003DMG400030386
EnsemblPlants:PGSC0003DMT400078129	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e
InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI0002965874

Description

60S ribosomal protein L10 [Source:PGSC_GENE;Acc:PGSC0003DMG400030386]

Coordinates

chr6:+:57711928..57714382

Molecular Weight (calculated)

24805.4 Da

IEP (calculated)

11.295

GRAVY (calculated)

-0.526

Length

219 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RFCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMTKSA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGVCARVA IGQVLLSVRC KDGNSNHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFSRTD YLKYKSENRI LPDGVNAKLL
201: GNHGRLAARQ PGRAFLTSA

Best Arabidopsis Sequence Match ( AT1G26910.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.