CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 5
plastid 2
nucleus 2
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91764
KRH35009
KRH37298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	KRG91764	AT1G71840.1	21798944
AT1G26910.1	KRH35009	AT1G71840.1	21798944
AT1G26910.1	KRH37298	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72557	Soybean	nucleus	79.47	94.14
KRH16949	Soybean	nucleus	79.47	94.14
KRH64232	Soybean	nucleus	77.95	91.93
KRH53698	Soybean	cytosol	77.95	91.93
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	12.17	91.43
Solyc06g082670.2.1	Tomato	plastid	75.29	90.41
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	75.29	90.41
PGSC0003DMT400006183	Potato	cytosol	62.36	89.62
GSMUA_Achr10P...	Banana	cytosol	76.05	89.29
EER93866	Sorghum	cytosol	74.14	88.64
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	75.67	88.44
Zm00001d033128_P001	Maize	plasma membrane, plastid	73.76	88.18
TraesCS1A01G112500.1	Wheat	nucleus	73.38	88.13
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	73.38	88.13
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	73.38	88.13
Os05t0169100-01	Rice	nucleus, plastid	73.0	87.67
CDX84036	Canola	cytosol, mitochondrion	73.0	87.27
TraesCS4A01G204800.1	Wheat	plastid	71.86	87.1
AT1G26910.1	Thale cress	mitochondrion	73.0	86.88
CDY49095	Canola	mitochondrion	72.62	86.82
AT1G14320.1	Thale cress	mitochondrion	72.62	86.82
CDX96861	Canola	cytosol	72.62	86.82
TraesCS4B01G108400.1	Wheat	golgi, unclear	71.48	86.64
EES06560	Sorghum	cytosol	73.76	86.61
GSMUA_Achr6P15860_001	Banana	mitochondrion	49.05	86.58
Solyc06g007520.2.1	Tomato	nucleus, unclear	75.29	86.46
CDX81630	Canola	cytosol	60.08	86.34
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	71.1	86.18
Bra016706.1-P	Field mustard	cytosol	59.7	85.79
AT1G66580.1	Thale cress	cytosol, mitochondrion	71.86	85.52
Os11t0220800-01	Rice	nucleus	72.62	85.27
CDY28582	Canola	cytosol, mitochondrion	71.1	84.62
CDY44087	Canola	cytosol, mitochondrion	71.1	84.62
CDY62060	Canola	mitochondrion	71.1	84.62
CDY38756	Canola	mitochondrion	70.72	84.55
CDY48394	Canola	cytosol	58.17	83.15
Bra003984.1-P	Field mustard	cytosol	58.17	83.15
Solyc06g082650.2.1	Tomato	nucleus	63.88	81.55
Bra026839.1-P	Field mustard	mitochondrion	36.88	81.51
Bra019662.1-P	Field mustard	mitochondrion	36.5	80.67
CDY39324	Canola	cytosol, mitochondrion	73.0	79.01
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	63.88	76.71
CDY33756	Canola	cytosol	72.62	76.71
Bra007877.1-P	Field mustard	mitochondrion	34.98	76.67
Bra016269.1-P	Field mustard	mitochondrion	34.6	76.47
KRH66434	Soybean	cytosol, mitochondrion, plastid	53.23	75.68
HORVU4Hr1G016190.4	Barley	extracellular, golgi	57.79	75.62
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	76.81	74.81
KRH65844	Soybean	cytosol	30.04	73.15
KRG88858	Soybean	cytosol	51.71	73.12
CDY01747	Canola	mitochondrion	72.24	71.7
HORVU1Hr1G024710.4	Barley	mitochondrion	68.82	70.7
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	28.52	63.56

Protein Annotations

EntrezGene:100779884	MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	EMBL:ACUP02010843	EnsemblPlantsGene:GLYMA_18G050600
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	UniProt:I1MZN4	InterPro:IPR036920	EnsemblPlants:KRG98102
ProteinID:KRG98102	ProteinID:KRG98102.1	PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726
PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686
TIGRFAMs:TIGR00279	UniParc:UPI00023DAD5B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:4361997..4364533

Molecular Weight (calculated)

29779.4 Da

IEP (calculated)

10.960

GRAVY (calculated)

-0.475

Length

263 amino acids

Sequence
(BLAST)

001: MTHAHTHTIK HKACASKGYK STTTFSLLHL QAFYYFVNSN NTTMGRRPAR CYRQIKNKPY PKSRFCRGVP EPKIRIYDVG MKKKGVDEFP FCVHLVSWEK
101: ENVSSEALEA ARIACNKYMA KFAGKDAFHL RVRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKPQGTCA RVNIGQVLLS VRCKDANSHH AQEALRRAKF
201: KFPGRQKIIL SRKWGFTKFS RSEYLKLKSE NRIVPDGVNA KVLGCHGPLA NREPGRAFLP ATA

Best Arabidopsis Sequence Match ( AT1G26910.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.