CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG26924

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	KXG26924	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	14.73	94.29
TraesCS4A01G204800.1	Wheat	plastid	90.62	93.55
Os11t0220800-01	Rice	nucleus	93.3	93.3
TraesCS4B01G108400.1	Wheat	golgi, unclear	90.18	93.09
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	89.73	92.63
EER93866	Sorghum	cytosol	90.62	92.27
Solyc06g082670.2.1	Tomato	plastid	87.5	89.5
GSMUA_Achr10P...	Banana	cytosol	88.84	88.84
KRH53698	Soybean	cytosol	88.39	88.79
KRH64232	Soybean	nucleus	88.39	88.79
KRH16949	Soybean	nucleus	87.5	88.29
KRH72557	Soybean	nucleus	87.5	88.29
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	87.95	87.56
Solyc06g007520.2.1	Tomato	nucleus, unclear	87.05	85.15
AT1G26910.1	Thale cress	mitochondrion	83.48	84.62
CDY38756	Canola	mitochondrion	83.04	84.55
AT1G66580.1	Thale cress	cytosol, mitochondrion	83.04	84.16
CDY49095	Canola	mitochondrion	82.59	84.09
CDX96861	Canola	cytosol	82.59	84.09
CDX84036	Canola	cytosol, mitochondrion	82.59	84.09
AT1G14320.1	Thale cress	mitochondrion	82.59	84.09
CDY44087	Canola	cytosol, mitochondrion	82.14	83.26
CDY62060	Canola	mitochondrion	82.14	83.26
CDY28582	Canola	cytosol, mitochondrion	82.14	83.26
CDX81630	Canola	cytosol	66.96	81.97
GSMUA_Achr6P15860_001	Banana	mitochondrion	54.46	81.88
Bra016706.1-P	Field mustard	cytosol	66.52	81.42
Solyc06g082650.2.1	Tomato	nucleus	74.11	80.58
CDY48394	Canola	cytosol	66.07	80.43
Bra003984.1-P	Field mustard	cytosol	66.07	80.43
HORVU4Hr1G016190.4	Barley	extracellular, golgi	70.98	79.1
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	75.0	76.71
CDY39324	Canola	cytosol, mitochondrion	82.59	76.13
CDY33756	Canola	cytosol	82.59	74.3
Bra026839.1-P	Field mustard	mitochondrion	39.29	73.95
Bra016269.1-P	Field mustard	mitochondrion	39.29	73.95
KRG98102	Soybean	mitochondrion, plastid	86.61	73.76
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	88.39	73.33
Bra019662.1-P	Field mustard	mitochondrion	38.84	73.11
KRH65844	Soybean	cytosol	34.82	72.22
Bra007877.1-P	Field mustard	mitochondrion	38.39	71.67
KRG88858	Soybean	cytosol	59.38	71.51
KRH66434	Soybean	cytosol, mitochondrion, plastid	58.93	71.35
CDY01747	Canola	mitochondrion	83.04	70.19
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	33.04	62.71
KXG39441	Sorghum	mitochondrion	81.25	56.0
PGSC0003DMT400053166	Potato	cytosol	36.16	35.53

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	EntrezGene:8073823	UniProt:C5XYN1	EnsemblPlants:EES06560
ProteinID:EES06560	ProteinID:EES06560.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	InterPro:IPR036920
PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e
InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	EnsemblPlantsGene:SORBI_3004G103700	SUPFAM:SSF54686	unigene:Sbi.18511
TIGRFAMs:TIGR00279	UniParc:UPI0001A85DC6	RefSeq:XP_002453584.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:9760081..9763597

Molecular Weight (calculated)

25263.9 Da

IEP (calculated)

10.963

GRAVY (calculated)

-0.559

Length

224 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMTKSA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGTCARVD IGQVLLSVRC KESNANHAEE ALRRAKFKFP GRQKIIRSRK WGFTKFTRAE YLKYKSEGRI APDGVNAKLL
201: GVHGPLSKRA PGKAFLAENI QASA

Best Arabidopsis Sequence Match ( AT1G26910.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.