Factsheet for Bra003984.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48394	Canola	cytosol	100.0	100.0
Bra007877.1-P	Field mustard	mitochondrion	63.59	97.5
Bra016269.1-P	Field mustard	mitochondrion	61.96	95.8
Bra016706.1-P	Field mustard	cytosol	93.48	93.99
Bra026839.1-P	Field mustard	mitochondrion	59.78	92.44
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	17.39	91.43
Bra019662.1-P	Field mustard	mitochondrion	58.15	89.92
PGSC0003DMT400006183	Potato	cytosol	82.61	83.06
AT1G66580.1	Thale cress	cytosol, mitochondrion	95.65	79.64
GSMUA_Achr6P15860_001	Banana	mitochondrion	61.41	75.84
Solyc06g082670.2.1	Tomato	plastid	83.7	70.32
EER93866	Sorghum	cytosol	83.15	69.55
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	82.61	69.41
Zm00001d033128_P001	Maize	plasma membrane, plastid	82.61	69.09
TraesCS4A01G204800.1	Wheat	plastid	80.43	68.2
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	80.98	68.04
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	80.98	68.04
TraesCS1A01G112500.1	Wheat	nucleus	80.98	68.04
TraesCS4B01G108400.1	Wheat	golgi, unclear	79.89	67.74
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	82.61	67.56
GSMUA_Achr10P...	Banana	cytosol	82.07	67.41
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	79.35	67.28
Os05t0169100-01	Rice	nucleus, plastid	79.89	67.12
Solyc06g007520.2.1	Tomato	nucleus, unclear	83.15	66.81
EES06560	Sorghum	cytosol	80.43	66.07
Os11t0220800-01	Rice	nucleus	78.8	64.73
Solyc06g082650.2.1	Tomato	nucleus	70.65	63.11
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	70.11	58.9
HORVU4Hr1G016190.4	Barley	extracellular, golgi	64.13	58.71
KRG98102	Soybean	mitochondrion, plastid	83.15	58.17
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	84.78	57.78
HORVU1Hr1G024710.4	Barley	mitochondrion	77.17	55.47
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	34.24	53.39

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	EnsemblPlantsGene:Bra003984	EnsemblPlants:Bra003984.1	EnsemblPlants:Bra003984.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR036920	UniProt:M4CIF0	PFAM:PF00252	PIRSF:PIRSF005590
ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf
InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	UniParc:UPI000254196C	:	:	:

Description

AT1G66580 (E=3e-101) | 60S ribosomal protein L10 (RPL10C)

Coordinates

chrA07:-:16124790..16125712

Molecular Weight (calculated)

20509.0 Da

IEP (calculated)

11.219

GRAVY (calculated)

-0.348

Length

184 amino acids

Sequence
(BLAST)

001: MKKKGVDEFP FCVHLVSWEK ENVSSEALEA ARIACNKYMV KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS
101: VRCKDNHGAH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTRLRQS KRVVPDGVNA KFLSNHGPLA NRQPGSAFIS ATSD

Best Arabidopsis Sequence Match ( AT1G66580.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E

Arabidopsis Description

RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.