Factsheet for Bra016269.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 4
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007877.1-P	Field mustard	mitochondrion	96.64	95.83
Bra026839.1-P	Field mustard	mitochondrion	89.08	89.08
Bra019662.1-P	Field mustard	mitochondrion	87.39	87.39
Bra003984.1-P	Field mustard	cytosol	95.8	61.96
GSMUA_Achr6P15860_001	Banana	mitochondrion	74.79	59.73
Bra016706.1-P	Field mustard	cytosol	87.39	56.83
CDY38756	Canola	mitochondrion	99.16	53.64
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	52.94	53.39
PGSC0003DMT400006183	Potato	cytosol	77.31	50.27
AT1G66580.1	Thale cress	cytosol, mitochondrion	92.44	49.77
Zm00001d033128_P001	Maize	plasma membrane, plastid	78.99	42.73
EER93866	Sorghum	cytosol	78.99	42.73
Solyc06g082670.2.1	Tomato	plastid	78.15	42.47
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	77.31	42.01
TraesCS4A01G204800.1	Wheat	plastid	76.47	41.94
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	75.63	41.47
TraesCS4B01G108400.1	Wheat	golgi, unclear	75.63	41.47
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	75.63	41.1
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	75.63	41.1
TraesCS1A01G112500.1	Wheat	nucleus	75.63	41.1
GSMUA_Achr10P...	Banana	cytosol	76.47	40.62
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	76.47	40.44
Os05t0169100-01	Rice	nucleus, plastid	73.95	40.18
Solyc06g007520.2.1	Tomato	nucleus, unclear	77.31	40.17
EES06560	Sorghum	cytosol	73.95	39.29
Os11t0220800-01	Rice	nucleus	72.27	38.39
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	80.67	35.56
KRG98102	Soybean	mitochondrion, plastid	76.47	34.6
Solyc06g082650.2.1	Tomato	nucleus	55.46	32.04
HORVU1Hr1G024710.4	Barley	mitochondrion	68.91	32.03
HORVU4Hr1G016190.4	Barley	extracellular, golgi	53.78	31.84
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	55.46	30.14
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	7.56	25.71

Protein Annotations

Gene3D:2.20.25.330	Gene3D:3.90.1170.10	MapMan:35.1	EnsemblPlantsGene:Bra016269	EnsemblPlants:Bra016269.1	EnsemblPlants:Bra016269.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR036920	UniProt:M4DIE2	PFAM:PF00252	ScanProsite:PS01257
PANTHER:PTHR11726	PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS
SUPFAM:SSF54686	UniParc:UPI00025418AB	:	:	:	:

Description

AT1G66580 (E=4e-060) | 60S ribosomal protein L10 (RPL10C)

Coordinates

chrA07:+:18514993..18515512

Molecular Weight (calculated)

13049.0 Da

IEP (calculated)

11.922

GRAVY (calculated)

-0.387

Length

119 amino acids

Sequence
(BLAST)

001: MLSCAGADRL QTGMRGAFGK ALGTCARVAI GQVLLSVRCK DNPGAHAQEA LRRAKFKFPG RQKIIVSRKW GFTKFNRADY TRMRQSKRIV PDGVNAKFLS
101: NHGPLAKRQP GSAFISATE

Best Arabidopsis Sequence Match ( AT1G66580.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E

Arabidopsis Description

RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.