Factsheet for GSMUA_Achr8P01550_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	GSMUA_Achr11P...	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	14.67	94.29
GSMUA_Achr10P...	Banana	cytosol	92.0	92.41
Solyc06g082670.2.1	Tomato	plastid	88.44	90.87
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	88.44	90.87
KRH64232	Soybean	nucleus	89.33	90.13
KRH53698	Soybean	cytosol	89.33	90.13
KRH72557	Soybean	nucleus	88.89	90.09
KRH16949	Soybean	nucleus	88.89	90.09
EER93866	Sorghum	cytosol	86.67	88.64
PGSC0003DMT400006183	Potato	cytosol	72.0	88.52
Zm00001d033128_P001	Maize	plasma membrane, plastid	86.22	88.18
EES06560	Sorghum	cytosol	87.56	87.95
TraesCS4A01G204800.1	Wheat	plastid	84.44	87.56
TraesCS1A01G112500.1	Wheat	nucleus	84.89	87.21
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	84.89	87.21
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	84.89	87.21
TraesCS4B01G108400.1	Wheat	golgi, unclear	84.0	87.1
Os11t0220800-01	Rice	nucleus	86.67	87.05
Os05t0169100-01	Rice	nucleus, plastid	84.44	86.76
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	83.56	86.64
GSMUA_Achr6P15860_001	Banana	mitochondrion	57.33	86.58
AT1G26910.1	Thale cress	mitochondrion	84.44	85.97
CDY49095	Canola	mitochondrion	84.0	85.91
CDX84036	Canola	cytosol, mitochondrion	84.0	85.91
AT1G14320.1	Thale cress	mitochondrion	84.0	85.91
CDX96861	Canola	cytosol	84.0	85.91
Solyc06g007520.2.1	Tomato	nucleus, unclear	87.11	85.59
CDY38756	Canola	mitochondrion	83.56	85.45
CDY62060	Canola	mitochondrion	83.56	85.07
CDY44087	Canola	cytosol, mitochondrion	83.56	85.07
CDY28582	Canola	cytosol, mitochondrion	83.56	85.07
AT1G66580.1	Thale cress	cytosol, mitochondrion	83.56	85.07
CDX81630	Canola	cytosol	68.44	84.15
Bra016706.1-P	Field mustard	cytosol	68.0	83.61
Bra003984.1-P	Field mustard	cytosol	67.56	82.61
CDY48394	Canola	cytosol	67.56	82.61
Solyc06g082650.2.1	Tomato	nucleus	74.67	81.55
Bra026839.1-P	Field mustard	mitochondrion	41.33	78.15
CDY39324	Canola	cytosol, mitochondrion	84.0	77.78
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	75.56	77.63
Bra019662.1-P	Field mustard	mitochondrion	40.89	77.31
HORVU4Hr1G016190.4	Barley	extracellular, golgi	68.44	76.62
Bra016269.1-P	Field mustard	mitochondrion	40.44	76.47
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	91.56	76.3
Bra007877.1-P	Field mustard	mitochondrion	40.44	75.83
KRG98102	Soybean	mitochondrion, plastid	88.44	75.67
CDY33756	Canola	cytosol	83.56	75.5
KRH66434	Soybean	cytosol, mitochondrion, plastid	61.33	74.59
KRG88858	Soybean	cytosol	60.44	73.12
KRH65844	Soybean	cytosol	34.67	72.22
HORVU1Hr1G024710.4	Barley	mitochondrion	80.89	71.09
CDY01747	Canola	mitochondrion	83.56	70.94
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	32.44	61.86

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G01550_001
EnsemblPlants:GSMUA_Achr8P01550_001	EnsemblPlants:GSMUA_Achr8T01550_001	InterPro:IPR036920	UniProt:M0TLQ7	PFAM:PF00252	PIRSF:PIRSF005590
ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf
InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI000295EB43	SEG:seg	:

Description

60S ribosomal protein L10 [Source:GMGC_GENE;Acc:GSMUA_Achr8G01550_001]

Coordinates

chr8:+:1241763..1244570

Molecular Weight (calculated)

25338.0 Da

IEP (calculated)

11.102

GRAVY (calculated)

-0.541

Length

225 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMTKFA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGTCARVN IGQVLLSVRC KDNNSNNAQE ALRRAKFKFP GRQKIIVSGK WGFTKFTRAD YMKLKTENRI GSDGVNAKLL
201: GWHGPLARRQ PGRAFLPPAA AAEAS

Best Arabidopsis Sequence Match ( AT1G14320.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY

Arabidopsis Description

RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.