Factsheet for HORVU1Hr1G024710.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G022250.4
HORVU3Hr1G013230.4
HORVU5Hr1G075920.16

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	HORVU2Hr1G022250.4	AT1G71840.1	21798944
AT1G26910.1	HORVU3Hr1G013230.4	AT1G71840.1	21798944
AT1G26910.1	HORVU5Hr1G075920.16	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	12.89	94.29
TraesCS1A01G112500.1	Wheat	nucleus	78.52	91.78
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	78.52	91.78
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	78.52	91.78
EER93866	Sorghum	cytosol	73.44	85.45
Os05t0169100-01	Rice	nucleus, plastid	73.05	85.39
Zm00001d033128_P001	Maize	plasma membrane, plastid	73.05	85.0
Solyc06g082670.2.1	Tomato	plastid	72.66	84.93
KRH72557	Soybean	nucleus	72.27	83.33
KRH16949	Soybean	nucleus	72.27	83.33
KRH64232	Soybean	nucleus	71.88	82.51
KRH53698	Soybean	cytosol	71.88	82.51
GSMUA_Achr10P...	Banana	cytosol	71.88	82.14
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	71.09	80.89
CDY62060	Canola	mitochondrion	69.53	80.54
CDY49095	Canola	mitochondrion	69.14	80.45
CDX96861	Canola	cytosol	69.14	80.45
CDY38756	Canola	mitochondrion	69.14	80.45
CDX84036	Canola	cytosol, mitochondrion	69.14	80.45
AT1G14320.1	Thale cress	mitochondrion	69.14	80.45
Solyc06g007520.2.1	Tomato	nucleus, unclear	71.88	80.35
AT1G26910.1	Thale cress	mitochondrion	69.14	80.09
CDY44087	Canola	cytosol, mitochondrion	69.14	80.09
CDY28582	Canola	cytosol, mitochondrion	69.14	80.09
AT1G66580.1	Thale cress	cytosol, mitochondrion	68.75	79.64
Solyc06g082650.2.1	Tomato	nucleus	63.67	79.13
HORVU4Hr1G016190.4	Barley	extracellular, golgi	60.94	77.61
CDX81630	Canola	cytosol	55.47	77.6
Bra003984.1-P	Field mustard	cytosol	55.47	77.17
CDY48394	Canola	cytosol	55.47	77.17
Bra016706.1-P	Field mustard	cytosol	55.08	77.05
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	63.67	74.43
CDY39324	Canola	cytosol, mitochondrion	69.92	73.66
GSMUA_Achr6P15860_001	Banana	mitochondrion	42.58	73.15
CDY33756	Canola	cytosol	69.53	71.49
KRH65844	Soybean	cytosol	29.69	70.37
Bra026839.1-P	Field mustard	mitochondrion	32.42	69.75
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	73.44	69.63
Bra019662.1-P	Field mustard	mitochondrion	32.03	68.91
Bra016269.1-P	Field mustard	mitochondrion	32.03	68.91
KRG98102	Soybean	mitochondrion, plastid	70.7	68.82
Bra007877.1-P	Field mustard	mitochondrion	32.03	68.33
KRG88858	Soybean	cytosol	49.61	68.28
CDY01747	Canola	mitochondrion	69.92	67.55
KRH66434	Soybean	cytosol, mitochondrion, plastid	48.05	66.49
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	25.39	55.08

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:3.90.1170.10	UniProt:A0A287EY89	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU1Hr1G024710
EnsemblPlants:HORVU1Hr1G024710.4	InterPro:IPR036920	PFAM:PF00252	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17
InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279
UniParc:UPI000B481F84	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:115706043..115708171

Molecular Weight (calculated)

29482.1 Da

IEP (calculated)

11.170

GRAVY (calculated)

-0.518

Length

256 amino acids

Sequence
(BLAST)

001: SSVPSRPRRR RRSSRLPRAA VAMGRRPARC YRQIKNKPYP KSRYCRGVPD PKIRIYDVGM KKKGVDEFSH CVHLVSWEKE NVSSEALEAA RIACNKYMTK
101: HAGKDAFHLR VRVHPFHVLR INKMLSCAGA DRLQTGMRGA FGKPQGVCAR VAIGQVLLSV RCKPNNAIHA TEALRRAKFK FPGRQKIIES RKWGFTKFNR
201: NDYLKFKSEG RVLPDGVNAK LSCLPHNLAE DYQFYQSLFY RLQLRFQAPV VLCYFV

Best Arabidopsis Sequence Match ( AT1G26910.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.