Factsheet for HORVU5Hr1G075920.16

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0685600-01	Rice	cytosol	27.35	51.02
HORVU3Hr1G013230.4	Barley	cytosol	27.21	50.0
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	26.26	48.49
Zm00001d041945_P003	Maize	cytosol	25.99	44.94
GSMUA_Achr11P...	Banana	cytosol	20.68	44.06
HORVU2Hr1G022250.4	Barley	mitochondrion	29.12	43.15
VIT_11s0016g02220.t01	Wine grape	cytosol	22.72	42.49
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	22.59	42.46
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	22.86	42.32
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	22.72	42.07
VIT_18s0164g00020.t01	Wine grape	nucleus	22.04	41.43
AT1G71840.1	Thale cress	nucleus	22.45	40.54
CDX96351	Canola	cytosol	21.5	39.6
CDX72834	Canola	cytosol	21.36	39.45
CDX68298	Canola	cytosol	20.68	39.07
Bra016111.1-P	Field mustard	cytosol	21.09	38.85
CDY36678	Canola	cytosol	20.41	38.56
Bra003910.1-P	Field mustard	cytosol	19.59	38.1
Zm00001d011779_P005	Maize	cytosol	24.9	37.35
KRH35009	Soybean	cytosol	6.8	36.23
KRH37298	Soybean	cytosol	18.37	35.62
HORVU4Hr1G009500.1	Barley	cytosol, plastid	9.8	20.75
HORVU6Hr1G063000.1	Barley	cytosol	8.57	19.81
HORVU7Hr1G111780.2	Barley	cytosol, plastid	8.98	19.08
HORVU2Hr1G041020.2	Barley	cytosol, plastid	9.25	18.89
HORVU0Hr1G027010.1	Barley	plastid	8.57	17.55
HORVU1Hr1G095080.1	Barley	cytosol, plastid	11.43	16.7
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	10.2	14.56
HORVU3Hr1G035450.7	Barley	mitochondrion	8.98	12.89
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	10.48	10.23
HORVU1Hr1G061600.22	Barley	cytosol	8.16	7.39
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	9.39	7.15

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287RU85	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030598
EnsemblPlantsGene:HORVU5Hr1G075920	EnsemblPlants:HORVU5Hr1G075920.16	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8
InterPro:Ribosome-inact_prot_sf	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF56371	UniParc:UPI000B47BAAE	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:-:548572130..548585936

Molecular Weight (calculated)

80774.7 Da

IEP (calculated)

6.341

GRAVY (calculated)

-0.329

Length

735 amino acids

Sequence
(BLAST)

001: MPRRSKAKRK TARKCHSNGK RRHTAKGGGA ARAHIMESHK PLRLFTLDLQ PDEIVASHDR LINDIKAMLE EDVRDELRKL RKKDKKPERV HGKPYTPKDG
101: AFLVELVHPG KRTVTLLFGK TDLYLKALHV SELWFPMEGC NVPIPPSSQL PYCLKCVPSA TKKSREFKFH EGIYHLNWSG SYLDLRGGMK QPFFHGAAEK
201: AHDKLCNAES LVVEGLDTDL QPGMAFFAIF IPECIRFPDV RRWARLQIAP GSVKGVVPPP EHRVLMRSWG TRSDEVYCPN ASTEIRRSVD IIKRNPLKHC
301: LLKPETKYEK AASSSVPCKK AVKPNQDEPG AQEAAVNVNE GNNAVSEEDE PGAQEAVINV NEDNAVNVED ELGEDDDDAL DEEDEVDAGT YEFSGHTDEV
401: MSVACHPEQS LLVLSGGADD RGYLWRAWSL NPQDVHEFSG HEDTITSVAF SCNGTLLACA SMDGTVSVWT TSTGALFTHL RPRSGSSFEW LKWHPRGPAL
501: LAGSDDHMLW LWYLGGDPEN YLMNVFAGHR RTVTCGDFTP DGKLICSGSD DASLRVWCPK SAQTKCIIEG ENFHSTGLTC LAITNDSKSI YSCSKDGSVC
601: VVSIELGQVV GALMGHGSTV CCIGISADGV VATGSRDSMV IIWDAETQEA RHHLPHEGIV TCLAWLGATR FVATGCEDGR IRIWDSVSGA RHAIFADGHD
701: GRVLALAVSC DRTTIVSAGS DTLALSHNIE FLQLV

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.