Factsheet for HORVU6Hr1G063000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G232000.1	Wheat	cytosol	93.08	98.67
TraesCS6B01G275200.2	Wheat	cytosol	93.08	98.67
TraesCS6A01G250200.1	Wheat	cytosol	93.08	98.67
HORVU0Hr1G027010.1	Barley	plastid	100.0	88.58
Os02t0543400-01	Rice	cytosol, mitochondrion	83.33	88.04
EES05216	Sorghum	cytosol	83.33	87.46
Zm00001d050708_P002	Maize	cytosol	82.39	86.47
GSMUA_Achr6P13100_001	Banana	cytosol	71.38	74.67
VIT_09s0002g01580.t01	Wine grape	cytosol	69.18	73.58
Solyc11g005550.1.1	Tomato	cytosol	67.61	71.91
KRH59511	Soybean	cytosol, nucleus	67.3	71.33
PGSC0003DMT400010145	Potato	cytosol	66.98	71.24
Bra024323.1-P	Field mustard	cytosol	66.35	71.04
CDY08856	Canola	cytosol	66.35	71.04
CDX84544	Canola	cytosol	66.67	70.67
AT5G64730.1	Thale cress	cytosol	66.04	70.23
KRH43376	Soybean	nucleus	67.92	67.29
HORVU4Hr1G009500.1	Barley	cytosol, plastid	27.36	25.07
HORVU2Hr1G041020.2	Barley	cytosol, plastid	26.73	23.61
HORVU7Hr1G111780.2	Barley	cytosol, plastid	22.33	20.52
HORVU3Hr1G013230.4	Barley	cytosol	18.87	15.0
HORVU1Hr1G095080.1	Barley	cytosol, plastid	22.64	14.31
HORVU3Hr1G035450.7	Barley	mitochondrion	21.38	13.28
HORVU2Hr1G022250.4	Barley	mitochondrion	19.18	12.3
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	19.18	11.84
HORVU5Hr1G075920.16	Barley	nucleus	19.81	8.57
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	19.5	8.23
HORVU1Hr1G061600.22	Barley	cytosol	16.04	6.28
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	17.61	5.8

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A287UES0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU6Hr1G063000	EnsemblPlants:HORVU6Hr1G063000.1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000B4873D0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

No Description!

Coordinates

chrchr6H:+:423364765..423440730

Molecular Weight (calculated)

35090.2 Da

IEP (calculated)

7.481

GRAVY (calculated)

-0.352

Length

318 amino acids

Sequence
(BLAST)

001: LTLQSPTPES SARSRAKEMS SAAQQLPRTE SRTLSGHEGA VLAVRFNHDG KYCLSCGKDR TLRLWNPHTG AHVKTYKSHG REVRDVNASS DNAKLVSCGG
101: DKQIFYWDVA SGKVIRKFRG HNSEVNSVKF NEHNTVVLSA GYDRSVRAFD CRSQSSDPIQ TIDTFQDSVM SVNVTNTEII AGSVDGTVRT FDIRMGRETV
201: DNLGHPVNCI SLSNDRNCIL ANCLDSTVRL LDKNSGEMLQ EYKGHICKSF KMDCCLTNDD AFVVGGSEDG FVFFWELVDA PIVATFRAHS SVVTSVSYHP
301: TKTCMLTSSV DGTIRVWT

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.