Factsheet for HORVU4Hr1G009500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G056800.1	Wheat	cytosol	91.07	98.75
TraesCS4B01G056500.1	Wheat	cytosol	91.64	98.45
TraesCS4A01G258000.1	Wheat	cytosol	91.64	98.45
Zm00001d033849_P002	Maize	extracellular, nucleus	83.29	90.6
OQU91075	Sorghum	cytosol	82.71	89.97
Os03t0725400-02	Rice	cytosol	81.27	87.04
GSMUA_Achr2P08580_001	Banana	cytosol	63.69	77.82
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	71.18	73.29
VIT_07s0205g00150.t01	Wine grape	cytosol	61.1	67.73
PGSC0003DMT400078695	Potato	cytosol	60.52	66.88
Solyc02g091790.2.1	Tomato	cytosol, nucleus	60.23	66.56
KRH50874	Soybean	nucleus	62.25	65.65
AT3G49660.1	Thale cress	cytosol	58.79	64.35
KRH02239	Soybean	nucleus	60.52	63.44
CDX86957	Canola	cytosol	54.47	60.58
CDY00226	Canola	cytosol, nucleus, plastid	54.47	60.0
Bra019610.1-P	Field mustard	plastid	54.47	59.62
HORVU2Hr1G041020.2	Barley	cytosol, plastid	53.6	51.67
HORVU6Hr1G063000.1	Barley	cytosol	25.07	27.36
HORVU7Hr1G111780.2	Barley	cytosol, plastid	26.8	26.88
HORVU0Hr1G027010.1	Barley	plastid	25.07	24.23
HORVU3Hr1G013230.4	Barley	cytosol	24.78	21.5
HORVU1Hr1G095080.1	Barley	cytosol, plastid	29.97	20.68
HORVU2Hr1G022250.4	Barley	mitochondrion	24.78	17.34
HORVU3Hr1G035450.7	Barley	mitochondrion	21.61	14.65
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	19.31	13.01
HORVU5Hr1G075920.16	Barley	nucleus	20.75	9.8
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	20.75	9.56
HORVU1Hr1G061600.22	Barley	cytosol	20.17	8.62
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	20.46	7.36

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	UniProt:A0A287N553	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0010228	GO:GO:0032040
GO:GO:0042393	GO:GO:0048188	EnsemblPlantsGene:HORVU4Hr1G009500	EnsemblPlants:HORVU4Hr1G009500.1	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B4709F0
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

No Description!

Coordinates

chrchr4H:+:27033568..27039820

Molecular Weight (calculated)

37369.0 Da

IEP (calculated)

7.872

GRAVY (calculated)

-0.230

Length

347 amino acids

Sequence
(BLAST)

001: QLAAASPKRS SGKNPKPFSF RLAAMAAPDA DETPASPGYA LRATLAGHRR AVSAVKFSPD GRLLASASAD KLLRVWSSAD LSPVAELEGH EEGVSDLSFS
101: PDGRLLASAS DDRTVRIWDL GAGGGARLVK TLAGHTNYAF CVAFSPHGNV LASGSFDETV RVWEVRSGRS LRVLPAHSEP VTAVDFDRDG AMIVSGSYDG
201: LCRIWDAATG HCVKTLIDDE SPPVSYSKFS PNGKFVLAST LDSTLRLWNF SAGKFLKTYT GHLNTKYCIP AAFSITNGKY IVSGSEDKCV YMWDLQSRKI
301: VQKLEGHTDT VIAVSCHPKE NMIASGALDN DKTVKVWVQK DEDQRNA

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.