Factsheet for PGSC0003DMT400078695

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091790.2.1	Tomato	cytosol, nucleus	99.36	99.36
VIT_07s0205g00150.t01	Wine grape	cytosol	82.48	82.75
KRH50874	Soybean	nucleus	79.3	75.68
KRH02239	Soybean	nucleus	77.71	73.72
AT3G49660.1	Thale cress	cytosol	72.93	72.24
CDX86957	Canola	cytosol	68.47	68.91
CDY00226	Canola	cytosol, nucleus, plastid	69.11	68.89
GSMUA_Achr2P08580_001	Banana	cytosol	61.78	68.31
Bra019610.1-P	Field mustard	plastid	68.79	68.14
OQU91075	Sorghum	cytosol	68.47	67.4
Zm00001d033849_P002	Maize	extracellular, nucleus	67.52	66.46
TraesCS4D01G056800.1	Wheat	cytosol	66.88	65.62
TraesCS4B01G056500.1	Wheat	cytosol	67.2	65.33
TraesCS4A01G258000.1	Wheat	cytosol	66.88	65.02
Os03t0725400-02	Rice	cytosol	66.56	64.51
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	68.79	64.09
HORVU4Hr1G009500.1	Barley	cytosol, plastid	66.88	60.52
PGSC0003DMT400049837	Potato	cytosol, plastid	58.28	58.1
PGSC0003DMT400010145	Potato	cytosol	26.11	27.42
PGSC0003DMT400067694	Potato	cytosol	28.98	26.76
PGSC0003DMT400023040	Potato	mitochondrion	21.02	21.5
PGSC0003DMT400046634	Potato	cytosol	32.8	21.41
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	24.84	19.65
PGSC0003DMT400039207	Potato	cytosol	25.16	15.52
PGSC0003DMT400056446	Potato	cytosol	20.7	11.38
PGSC0003DMT400065114	Potato	cytosol	21.66	8.38
PGSC0003DMT400057760	Potato	cytosol	4.14	1.64
PGSC0003DMT400056447	Potato	extracellular	0.0	0.0

Protein Annotations

EntrezGene:102585307	MapMan:12.3.3.2.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0010228	GO:GO:0042393
GO:GO:0048188	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1D0K0	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG401030621	PGSC:PGSC0003DMG401030621	EnsemblPlants:PGSC0003DMT400078695	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF603	SMART:SM00320	SUPFAM:SSF50978
InterPro:Swd3-like	UniParc:UPI0002962D79	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_006357747.1	:	:	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG401030621]

Coordinates

chr2:+:42121804..42128362

Molecular Weight (calculated)

34460.4 Da

IEP (calculated)

6.842

GRAVY (calculated)

-0.277

Length

314 amino acids

Sequence
(BLAST)

001: MASPTETSES FKPYELKFTL SGHKRAISSV KFSDDGKILA TSSADKTART WDVSDGSLLH EFLGHEQGIS DVAFSSDGRH LVTASDDKTV RLWDVSTGSH
101: IKTLTGHTNY VFCVNFNPQA NMLVSGSFDE TVRLWDVKTG KCLKVLPAHS DPVTAVNFNR DGSLIVSSSY DGLCRIWDAS TGHCMKTIID DENPPVSFVK
201: FSPNGKFILV GTLDNSLRLW NFSTGKVLKT YTDHVNSKYC ISSTFSITNG KYIVSGSEDN CVYLWELQSR KIVQKLEGHT DTVISVSCNP TQNMIASGSL
301: GNDKTVKVWT QGGD

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.