Factsheet for Os03t0725400-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

cytosol: 19685898

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G056800.1	Wheat	cytosol	86.42	87.5
OQU91075	Sorghum	cytosol	86.11	87.46
TraesCS4A01G258000.1	Wheat	cytosol	86.73	87.0
Zm00001d033849_P002	Maize	extracellular, nucleus	85.49	86.83
TraesCS4B01G056500.1	Wheat	cytosol	86.42	86.69
HORVU4Hr1G009500.1	Barley	cytosol, plastid	87.04	81.27
GSMUA_Achr2P08580_001	Banana	cytosol	66.67	76.06
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	73.46	70.62
VIT_07s0205g00150.t01	Wine grape	cytosol	66.05	68.37
PGSC0003DMT400078695	Potato	cytosol	64.51	66.56
Solyc02g091790.2.1	Tomato	cytosol, nucleus	64.2	66.24
AT3G49660.1	Thale cress	cytosol	63.58	64.98
KRH50874	Soybean	nucleus	65.12	64.13
KRH02239	Soybean	nucleus	63.58	62.24
CDX86957	Canola	cytosol	59.26	61.54
CDY00226	Canola	cytosol, nucleus, plastid	59.26	60.95
Bra019610.1-P	Field mustard	plastid	59.26	60.57
Os07t0572000-01	Rice	plastid	58.95	56.51
Os02t0543400-01	Rice	cytosol, mitochondrion	25.93	27.91
Os06t0653800-01	Rice	nucleus	29.01	27.41
Os10t0104500-01	Rice	cytosol	33.02	22.29
Os11t0594200-01	Rice	cytosol	32.72	22.08
Os03t0685600-01	Rice	cytosol	24.69	20.3
Os03t0339100-01	Rice	nucleus	22.53	15.47
Os03t0746600-01	Rice	nucleus	22.22	14.09
Os10t0494800-01	Rice	cytosol	22.84	8.46
Os01t0780400-02	Rice	cytosol	20.37	7.88
Os04t0677700-00	Rice	cytosol	19.14	6.97
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	1.54	2.25
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	0.62	0.71

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	EntrezGene:4333964	ProteinID:ABF98634.1	ProteinID:ABF98635.1	EMBL:AK105499
EMBL:AK111860	EMBL:AK112085	ProteinID:BAF13044.1	ProteinID:BAS86167.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0010228
GO:GO:0042393	GO:GO:0048188	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os03g0725400
EnsemblPlants:Os03t0725400-02	PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	UniProt:Q10DN8	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0000DB4377	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_015628457.1	RefSeq:XP_015628458.1	RefSeq:XP_015628460.1	SEG:seg	:	:

Description

OsWD40-86Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat protein BIG-3). (Os03t0725400-01);Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat protein BIG-3). (Os03t0725400-02);Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat protein BIG-3). (Os03t0725400-03)

Coordinates

chr3:+:29486058..29490529

Molecular Weight (calculated)

34834.2 Da

IEP (calculated)

6.596

GRAVY (calculated)

-0.180

Length

324 amino acids

Sequence
(BLAST)

001: MAAEDNPGYA LRATLAGHRR AVSAVKFSPD GRLLASASAD KLLRVWSTSD LASPVAELAG HGEGVSDLAF SPDGRLIASA SDDRTVRIWD LGDGGGGGGG
101: GEPRLMKTLS GHTNYAFCLA FSPHGNMLAS GSFDETVRVW EVRSGRCLRV LPAHSEPVTS VDFNRDGAMI VSGSYDGLCR IWDSATGHCI KTLIDDESPP
201: VSFAKFSPNG KFVLAATLDS KLRLWNFSAG KFLKTYTGHV NTKYCIPAAF SITNGKYIVS GSEDKCVYIW DLQSRKILQK LEGHTDTVIA VSCHPNENMI
301: ASGGLDGDKT VKVWVQKEED QMEV

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.