Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G592600.1 | Wheat | cytosol | 80.22 | 77.19 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 79.89 | 76.86 |
| TraesCS2B01G591600.2 | Wheat | cytosol | 78.76 | 76.44 |
| KXG27434 | Sorghum | cytosol | 78.88 | 76.3 |
| Zm00001d026621_P006 | Maize | cytosol | 75.96 | 74.29 |
| Zm00001d001828_P033 | Maize | cytosol | 76.4 | 73.75 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 31.35 | 58.99 |
| KRG93160 | Soybean | cytosol | 49.66 | 58.23 |
| KRH56498 | Soybean | cytosol | 49.44 | 57.97 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 51.91 | 57.97 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 49.33 | 55.36 |
| Solyc02g021360.2.1 | Tomato | cytosol | 48.88 | 54.51 |
| PGSC0003DMT400065114 | Potato | cytosol | 46.18 | 50.68 |
| Solyc04g008720.2.1 | Tomato | cytosol | 46.07 | 50.62 |
| CDY60225 | Canola | cytosol | 44.61 | 47.54 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 44.61 | 47.43 |
| CDX88026 | Canola | cytosol | 44.16 | 47.41 |
| AT5G08390.1 | Thale cress | cytosol | 44.61 | 47.32 |
| Bra005990.1-P | Field mustard | cytosol | 44.83 | 47.05 |
| CDX81101 | Canola | cytosol | 44.38 | 46.97 |
| CDX80363 | Canola | cytosol | 43.71 | 45.76 |
| Bra009683.1-P | Field mustard | cytosol | 43.6 | 42.83 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 49.44 | 41.98 |
| Os10t0494800-01 | Rice | cytosol | 39.1 | 39.77 |
| Os01t0780400-02 | Rice | cytosol | 35.84 | 38.07 |
| Os01t0531300-00 | Rice | endoplasmic reticulum, extracellular | 9.33 | 37.39 |
| Os06t0653800-01 | Rice | nucleus | 7.87 | 20.41 |
| Os03t0725400-02 | Rice | cytosol | 6.97 | 19.14 |
| Os07t0572000-01 | Rice | plastid | 7.08 | 18.64 |
| Os02t0543400-01 | Rice | cytosol, mitochondrion | 5.73 | 16.94 |
| Os03t0685600-01 | Rice | cytosol | 7.08 | 15.99 |
| Os11t0594200-01 | Rice | cytosol | 8.43 | 15.62 |
| Os10t0104500-01 | Rice | cytosol | 8.31 | 15.42 |
| Os03t0339100-01 | Rice | nucleus | 7.3 | 13.77 |
| Os03t0746600-01 | Rice | nucleus | 7.19 | 12.52 |
| Os01t0951000-02 | Rice | cytosol, mitochondrion, nucleus | 1.8 | 5.65 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | UniProt:A0A0P0WGD2 | ProteinID:BAS91640.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | EnsemblPlantsGene:Os04g0677700 | EnsemblPlants:Os04t0677700-00 |
| PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0003938CE0 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
katanin P80b, Katanin regulatory subunit P80bSimilar to H0402C08.11 protein. (Os04t0677700-00)
Coordinates
chr4:-:34614351..34622669
Molecular Weight (calculated)
96704.8 Da
IEP (calculated)
9.076
GRAVY (calculated)
-0.479
Length
890 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGDD HKVNLWAIGK PNSILSLSGH TSAVESVNFD STEVFVAAGA ASGTIKLWDL EEAKIVRTLT
101: GHRSNCMSVD FHPFGEFFAS GSLDTNLKIW DIRRKGCIHT YKGHTRGVNA IRFTPDGRWV VSGGEDNVVK LWDLTAGKLL HDFKCHEGQI QCIDFHPHEF
201: LLATGSSDKT VKFWDLETFE LIGSTGPETT GVRSMTFNPD GRSLLCGLHE SLKRLEPYAT GTSTKLNGHS ELKSSSSSTM PLQNDSGSRA NIGRLSVLQN
301: SENNIKSSTG RLSVSQNSDS ALKETKSTTS SGLVPVTPQR AGNGSSTKTV GNSTFASSGT NLKRGSLKSN NSSSLQNFSK IDVVPVIIPR TSSGPELATD
401: SRSDAADVGP VLSKSGRRIE IANDSRKESS DVAAAVVPRT NSRTEMASDS APVVGPRANL RMEVSADSAP IVPKSGRRLE SSVESRKEST DVASAAAPKT
501: SSRMEVAPDS APLLSKAGRR VESATDSRKE SADVAPVVPR TTSRMEMAPD SRREISAGRM SPFRVQSRYS ELRKLNNAKA DADKVDAGSK NSETDDFTCQ
601: IYLPRRNGVV QSGISEETRE DAKPGVIDRM GFPSSAEPNT HRSENYVSRM RKPRDNCYIE VSRAGRTRPT ASNWESRDQS PGNEEPTTSN SSSMAPTGRL
701: YSSRGSSQAA ETPTIASDED VLSVLMEQHE LFLSSTRSRL TKLQIVHQMW QRNDIRGIIA AMEKMSDHAV SADVASVLME KSETITLDLC TVILPVLTDL
801: LESKTDRHLG VSLELLVKLV RTFGSVIHST VSAGPSSVGV DLQAEQRRER CNLCFIELEK VKNKLPFLSR RKGAVANTAQ ELSLVFQEVM
101: GHRSNCMSVD FHPFGEFFAS GSLDTNLKIW DIRRKGCIHT YKGHTRGVNA IRFTPDGRWV VSGGEDNVVK LWDLTAGKLL HDFKCHEGQI QCIDFHPHEF
201: LLATGSSDKT VKFWDLETFE LIGSTGPETT GVRSMTFNPD GRSLLCGLHE SLKRLEPYAT GTSTKLNGHS ELKSSSSSTM PLQNDSGSRA NIGRLSVLQN
301: SENNIKSSTG RLSVSQNSDS ALKETKSTTS SGLVPVTPQR AGNGSSTKTV GNSTFASSGT NLKRGSLKSN NSSSLQNFSK IDVVPVIIPR TSSGPELATD
401: SRSDAADVGP VLSKSGRRIE IANDSRKESS DVAAAVVPRT NSRTEMASDS APVVGPRANL RMEVSADSAP IVPKSGRRLE SSVESRKEST DVASAAAPKT
501: SSRMEVAPDS APLLSKAGRR VESATDSRKE SADVAPVVPR TTSRMEMAPD SRREISAGRM SPFRVQSRYS ELRKLNNAKA DADKVDAGSK NSETDDFTCQ
601: IYLPRRNGVV QSGISEETRE DAKPGVIDRM GFPSSAEPNT HRSENYVSRM RKPRDNCYIE VSRAGRTRPT ASNWESRDQS PGNEEPTTSN SSSMAPTGRL
701: YSSRGSSQAA ETPTIASDED VLSVLMEQHE LFLSSTRSRL TKLQIVHQMW QRNDIRGIIA AMEKMSDHAV SADVASVLME KSETITLDLC TVILPVLTDL
801: LESKTDRHLG VSLELLVKLV RTFGSVIHST VSAGPSSVGV DLQAEQRRER CNLCFIELEK VKNKLPFLSR RKGAVANTAQ ELSLVFQEVM
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARGGLV AKSVLELNLA FQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARGGLV AKSVLELNLA FQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.