Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60225 | Canola | cytosol | 94.53 | 95.21 |
| Bra005990.1-P | Field mustard | cytosol | 94.29 | 93.51 |
| AT5G08390.1 | Thale cress | cytosol | 85.02 | 85.22 |
| CDX88026 | Canola | cytosol | 74.67 | 75.75 |
| CDX80363 | Canola | cytosol | 74.44 | 73.65 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 35.79 | 63.64 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 58.86 | 62.11 |
| KRG93160 | Soybean | cytosol | 55.17 | 61.13 |
| KRH56498 | Soybean | cytosol | 54.7 | 60.61 |
| CDY54233 | Canola | golgi | 13.08 | 59.14 |
| Solyc02g021360.2.1 | Tomato | cytosol | 54.34 | 57.27 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 51.96 | 55.11 |
| Solyc04g008720.2.1 | Tomato | cytosol | 51.25 | 53.21 |
| PGSC0003DMT400065114 | Potato | cytosol | 51.13 | 53.02 |
| KXG27434 | Sorghum | cytosol | 51.49 | 47.07 |
| Zm00001d026621_P006 | Maize | cytosol | 50.54 | 46.7 |
| Zm00001d001828_P033 | Maize | cytosol | 51.13 | 46.64 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 51.13 | 46.49 |
| TraesCS2A01G592600.1 | Wheat | cytosol | 51.01 | 46.38 |
| TraesCS2B01G591600.2 | Wheat | cytosol | 50.3 | 46.13 |
| Os04t0677700-00 | Rice | cytosol | 46.97 | 44.38 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 51.25 | 41.13 |
| CDY34658 | Canola | mitochondrion | 37.34 | 40.99 |
| CDY34846 | Canola | nucleus | 36.86 | 33.99 |
| CDY52222 | Canola | cytosol | 39.71 | 29.77 |
| CDY03812 | Canola | cytosol | 39.48 | 29.56 |
| CDY15006 | Canola | cytosol | 34.96 | 28.99 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 9.27 | 24.76 |
| CDX86957 | Canola | cytosol | 9.16 | 24.68 |
| CDX70436 | Canola | plastid | 4.4 | 22.16 |
| CDX97287 | Canola | cytosol | 8.32 | 21.47 |
| CDX91316 | Canola | cytosol | 8.32 | 21.47 |
| CDX67810 | Canola | cytosol | 8.44 | 19.78 |
| CDX72090 | Canola | mitochondrion | 7.85 | 19.76 |
| CDX72834 | Canola | cytosol | 8.32 | 17.59 |
| CDX68298 | Canola | cytosol | 8.09 | 17.48 |
| CDX79802 | Canola | cytosol, golgi | 8.56 | 17.35 |
| CDX96351 | Canola | cytosol | 8.2 | 17.29 |
| CDY17912 | Canola | cytosol, golgi | 8.56 | 17.27 |
| CDY36678 | Canola | cytosol | 7.97 | 17.22 |
| CDY08856 | Canola | cytosol | 6.06 | 17.17 |
| CDX84544 | Canola | cytosol | 6.06 | 17.0 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 6.3 | 16.61 |
| CDY09645 | Canola | cytosol | 9.27 | 16.49 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 8.44 | 16.03 |
| CDY27046 | Canola | cytosol | 8.8 | 15.55 |
| CDX96156 | Canola | cytosol | 8.8 | 15.55 |
| CDX84790 | Canola | cytosol | 8.8 | 15.55 |
| CDY52843 | Canola | nucleus | 4.28 | 15.52 |
| CDY09730 | Canola | cytosol | 8.8 | 15.38 |
| CDX90556 | Canola | cytosol | 8.8 | 15.38 |
| CDY34965 | Canola | cytosol | 8.32 | 14.89 |
| CDY28352 | Canola | cytosol | 8.44 | 14.88 |
| CDY44171 | Canola | cytosol | 2.73 | 14.84 |
| CDX70506 | Canola | nucleus | 10.82 | 14.47 |
| CDX91118 | Canola | nucleus | 11.06 | 14.44 |
| CDY27174 | Canola | cytosol | 2.62 | 14.38 |
| CDX98931 | Canola | nucleus | 8.2 | 14.38 |
| CDX85646 | Canola | nucleus | 11.06 | 14.37 |
| CDY05801 | Canola | cytosol | 8.56 | 14.34 |
| CDX70097 | Canola | cytosol | 7.85 | 14.29 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 1.66 | 14.14 |
| CDX78524 | Canola | nucleus | 10.94 | 13.77 |
| CDY08014 | Canola | mitochondrion | 1.66 | 13.73 |
| CDY05802 | Canola | mitochondrion | 8.92 | 13.04 |
| CDY01533 | Canola | plastid | 1.19 | 6.33 |
| CDY69403 | Canola | nucleus | 0.48 | 2.16 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:A0A078CVF0 | EnsemblPlants:CDX81101 | ProteinID:CDX81101 | ProteinID:CDX81101.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00134547001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 | PFAM:PF13925 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EDE49B | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaC03g03550D
Coordinates
chrLK031823:+:1725337..1730101
Molecular Weight (calculated)
92647.9 Da
IEP (calculated)
8.093
GRAVY (calculated)
-0.503
Length
841 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR KLVTGGEDHK VNLWAIGKPN AILSLQGHSS GVDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVNFH PFGEFFASGS RDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLHE FKSHEGQIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLHESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNFHQERISS SGRDQPVLND NSSKVILRNG SQKVNPSLKE TKSHGRSSVP QNPDPSPKEP KSTGRSSVSQ SSDPLVKEPK PLGRLSVTHS
401: SDAAKESLTS SCMFYFCSFF FSTGSTSGSP HRLTSTSSPK VSSGVVSTAA ASKRNNLKAN LPIVNKGDFS SVIVPRTDPI IEQAVESRAE LDIIGRTMPY
501: SLQSKAADSR RLSSIRNEPD LPTDSPLERS HSQPTEPSNL QDGNTFTSEE SGEWDTAERK NKDNRYRGFG RFNSRSLLRS PPRNHDENSD LNSFCGNRDQ
601: SPIESRRGGR LHSLAQYRER RGRIFNSEGD HVSSSSGGNM TTPNIRPSNM FNQRGNHVPV DEGITSDSEE DKAAEVMGQH DQFVSSMQSR LAKLQVVRRY
701: WERNDVKNSI SSIEKMADNA VVADVLVIIT ERTEVLTLDT CTSLLPLLSA LLASNMDRHL SVCLDLLLKL LRMYGSQIYS SLSAPSSVGV DIEAEQRMER
801: YSRCFVELEK IKACLPSLER RGGLVAKTIH ELNLIFQEVS S
101: RSNCISVNFH PFGEFFASGS RDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLHE FKSHEGQIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLHESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNFHQERISS SGRDQPVLND NSSKVILRNG SQKVNPSLKE TKSHGRSSVP QNPDPSPKEP KSTGRSSVSQ SSDPLVKEPK PLGRLSVTHS
401: SDAAKESLTS SCMFYFCSFF FSTGSTSGSP HRLTSTSSPK VSSGVVSTAA ASKRNNLKAN LPIVNKGDFS SVIVPRTDPI IEQAVESRAE LDIIGRTMPY
501: SLQSKAADSR RLSSIRNEPD LPTDSPLERS HSQPTEPSNL QDGNTFTSEE SGEWDTAERK NKDNRYRGFG RFNSRSLLRS PPRNHDENSD LNSFCGNRDQ
601: SPIESRRGGR LHSLAQYRER RGRIFNSEGD HVSSSSGGNM TTPNIRPSNM FNQRGNHVPV DEGITSDSEE DKAAEVMGQH DQFVSSMQSR LAKLQVVRRY
701: WERNDVKNSI SSIEKMADNA VVADVLVIIT ERTEVLTLDT CTSLLPLLSA LLASNMDRHL SVCLDLLLKL LRMYGSQIYS SLSAPSSVGV DIEAEQRMER
801: YSRCFVELEK IKACLPSLER RGGLVAKTIH ELNLIFQEVS S
001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.