Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34658 | Canola | mitochondrion | 79.61 | 94.78 |
| CDY54233 | Canola | golgi | 15.68 | 76.88 |
| AT1G11160.1 | Thale cress | cytosol | 80.26 | 71.69 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 32.24 | 56.43 |
| CDY52222 | Canola | cytosol | 68.31 | 55.53 |
| CDY03812 | Canola | cytosol | 67.87 | 55.12 |
| CDY15006 | Canola | cytosol | 61.18 | 55.03 |
| KRH20528 | Soybean | cytosol | 43.86 | 51.41 |
| KRH49977 | Soybean | cytosol | 37.28 | 49.63 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 15.57 | 41.89 |
| Solyc02g078800.2.1 | Tomato | extracellular | 45.5 | 40.33 |
| Zm00001d012620_P025 | Maize | cytosol | 35.2 | 38.49 |
| Os01t0780400-02 | Rice | cytosol | 35.31 | 38.42 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 34.76 | 38.28 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 34.76 | 38.15 |
| OQU87670 | Sorghum | cytosol | 34.65 | 37.98 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 34.54 | 37.91 |
| CDX88026 | Canola | cytosol | 33.99 | 37.39 |
| CDY60225 | Canola | cytosol | 33.99 | 37.13 |
| CDX81101 | Canola | cytosol | 33.99 | 36.86 |
| CDX80363 | Canola | cytosol | 33.77 | 36.24 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 38.05 | 35.85 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 35.2 | 33.26 |
| PGSC0003DMT400057760 | Potato | cytosol | 22.59 | 25.91 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 7.68 | 22.22 |
| CDX86957 | Canola | cytosol | 7.57 | 22.12 |
| CDX72090 | Canola | mitochondrion | 7.79 | 21.26 |
| CDX91316 | Canola | cytosol | 7.24 | 20.25 |
| CDY44171 | Canola | cytosol | 3.4 | 20.0 |
| CDX97287 | Canola | cytosol | 7.13 | 19.94 |
| CDX67810 | Canola | cytosol | 7.57 | 19.22 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 6.69 | 19.12 |
| CDX84544 | Canola | cytosol | 6.14 | 18.67 |
| CDY08856 | Canola | cytosol | 6.03 | 18.52 |
| CDX68298 | Canola | cytosol | 7.89 | 18.51 |
| CDY36678 | Canola | cytosol | 7.89 | 18.51 |
| CDX72834 | Canola | cytosol | 8.0 | 18.34 |
| CDY27174 | Canola | cytosol | 3.07 | 18.3 |
| CDX96351 | Canola | cytosol | 7.68 | 17.54 |
| CDX70436 | Canola | plastid | 3.18 | 17.37 |
| CDY27046 | Canola | cytosol | 8.55 | 16.39 |
| CDX84790 | Canola | cytosol | 8.55 | 16.39 |
| CDX96156 | Canola | cytosol | 8.55 | 16.39 |
| CDX79802 | Canola | cytosol, golgi | 7.46 | 16.39 |
| CDY17912 | Canola | cytosol, golgi | 7.46 | 16.31 |
| CDY09645 | Canola | cytosol | 8.44 | 16.28 |
| CDY09730 | Canola | cytosol | 8.44 | 16.01 |
| CDX90556 | Canola | cytosol | 8.44 | 16.01 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 7.57 | 15.58 |
| CDY34965 | Canola | cytosol | 8.0 | 15.53 |
| CDY28352 | Canola | cytosol | 8.11 | 15.51 |
| CDY52843 | Canola | nucleus | 3.84 | 15.09 |
| CDX98931 | Canola | nucleus | 7.89 | 15.0 |
| CDX70097 | Canola | cytosol | 7.46 | 14.72 |
| CDX91118 | Canola | nucleus | 10.31 | 14.6 |
| CDY05801 | Canola | cytosol | 8.0 | 14.54 |
| CDX70506 | Canola | nucleus | 9.87 | 14.31 |
| CDX85646 | Canola | nucleus | 9.98 | 14.06 |
| CDX78524 | Canola | nucleus | 9.98 | 13.62 |
| CDY05802 | Canola | mitochondrion | 8.22 | 13.04 |
| CDY08014 | Canola | mitochondrion | 1.21 | 10.78 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 1.1 | 10.1 |
| CDY01533 | Canola | plastid | 0.77 | 4.43 |
| CDY69403 | Canola | nucleus | 0.44 | 2.16 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:A0A078HAW3 | UniProt:A0A078HAW3 | EnsemblPlants:CDY34846 | ProteinID:CDY34846 |
| ProteinID:CDY34846.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00057406001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 |
| PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EE69DA | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
BnaA09g47720DKatanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A078HAW3]
Coordinates
chrLK032342:-:148477..153205
Molecular Weight (calculated)
100774.0 Da
IEP (calculated)
7.996
GRAVY (calculated)
-0.471
Length
912 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKRGYKLQE FLAHSANVNC LSIGKKTTRF LITGGDDCKV KLWSIGKSTS LTSLCGHTSP IDSVTFNSEE ALVLAGASSG VIKLWNLQEA KVVRGFTGHI
101: SNCSALEFHP FGQYLASGSS DATLKIWDIR KKGCIQTYKG HTRGISTVKF TPDGRWLVSG GLDNVVKIWD ITAGKLLHEF KFHDGPIRSL DFHPLEFLLA
201: TGSADRTVKF WDLETFELIG STRPEATGVR SIAFHPDGRT LFCGLDDSLK VYSWEPVICR DSVEMGWSTL GDFCINENKF VGCSYYRNSV GIWVSDISKL
301: EPYGAGSEDE NECMVKRFSV LDEQASERKG CGSRGSSSPD YETKEIKNIY VDSIGGTLKG AIRASEKQNA DDKSSRMHSV VDSDSGEESS HSRSESVASS
401: KTNPGMMLRP AHVRKTLAKF EESASVQYGT RKKSSQDIEE ETQTRNAEDS TIKGIMYKFE KALSSEPPTD EATRMLHKPP RVQRSSYNNN HNESRRAMSV
501: DSATLNNSKG GLEYSGRNVE DTNDQHSSTK TERVLSPEKP GDEQTIKVVS GRTRSLVERF ERGEKITHTE EADNTNAVEQ DPDKTSRQTG EAPVVVSTRR
601: ARSTPARVMP IVLNMKSDEP PSTQPARTSS VPVILNQSTN DEPSVSLTQS RTSPARTLPL TLNQATHIVL SRRPRRTSSA RVRPMSLSQA VSMTSHECSV
701: TSTRPDRTSP ARVTQMLATP PTEIDQVADM AQDETHLSSQ TDSDITENLM QTHEEFLSTL QSRLTKLQIV RHFWERSDVK GAIGALRKLT DQSVQADVIS
801: ILTDKIEILT LDMFSQLVPV LTSLLGSRTE RPVNVSLDML LKLVAVFGTV IRSTVTAPRI VGVDLHADER IQICQVCSAG LHKIQRILPI LARRGGLITR
901: KAQELNLVLQ QT
101: SNCSALEFHP FGQYLASGSS DATLKIWDIR KKGCIQTYKG HTRGISTVKF TPDGRWLVSG GLDNVVKIWD ITAGKLLHEF KFHDGPIRSL DFHPLEFLLA
201: TGSADRTVKF WDLETFELIG STRPEATGVR SIAFHPDGRT LFCGLDDSLK VYSWEPVICR DSVEMGWSTL GDFCINENKF VGCSYYRNSV GIWVSDISKL
301: EPYGAGSEDE NECMVKRFSV LDEQASERKG CGSRGSSSPD YETKEIKNIY VDSIGGTLKG AIRASEKQNA DDKSSRMHSV VDSDSGEESS HSRSESVASS
401: KTNPGMMLRP AHVRKTLAKF EESASVQYGT RKKSSQDIEE ETQTRNAEDS TIKGIMYKFE KALSSEPPTD EATRMLHKPP RVQRSSYNNN HNESRRAMSV
501: DSATLNNSKG GLEYSGRNVE DTNDQHSSTK TERVLSPEKP GDEQTIKVVS GRTRSLVERF ERGEKITHTE EADNTNAVEQ DPDKTSRQTG EAPVVVSTRR
601: ARSTPARVMP IVLNMKSDEP PSTQPARTSS VPVILNQSTN DEPSVSLTQS RTSPARTLPL TLNQATHIVL SRRPRRTSSA RVRPMSLSQA VSMTSHECSV
701: TSTRPDRTSP ARVTQMLATP PTEIDQVADM AQDETHLSSQ TDSDITENLM QTHEEFLSTL QSRLTKLQIV RHFWERSDVK GAIGALRKLT DQSVQADVIS
801: ILTDKIEILT LDMFSQLVPV LTSLLGSRTE RPVNVSLDML LKLVAVFGTV IRSTVTAPRI VGVDLHADER IQICQVCSAG LHKIQRILPI LARRGGLITR
901: KAQELNLVLQ QT
0001: MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS PMSLCGHTSP VDSVAFNSEE VLVLAGASSG VIKLWDLEES KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P
0101: SNCSAVEFHP FGEFLASGSS DTNLRVWDTR KKGCIQTYKG HTRGISTIEF SPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KCHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG TTRPEATGVR AIAFHPDGQT LFCGLDDGLK VYSWEPVICR DGVDMGWSTL GDFCINEGKF IGCSYYRNSV GIWVSDISEL
0301: EPYGAVSEDK NECMVKRFSV LNDQSERMGS GPRGSVSPDY ETREIKNIYV DSTGGNLNVA QNPGSLKATL PLESGKVATM VSEKQNAAYF GPAGDKYSST
0401: SRDSDSGEES SYSERESIPF SRTKSGMLLR PAHVRKTLAK FEESKQSAVV QSATRKKSGL AVEEEPQTQN AFLSEQNASK PFDAEDSIIK GITNKFEKAL
0501: SSEPPTDEAN RMFLKPPRIH RSSNSKYNDT RRAMSADPAT FGKGGMENSG DVEDIPSKTE RVLSREKPGD EQKNTEYPSG SRELNPVKIV EGVNVVSGRT
0601: RSLVEKFERG EKTTHTEGAS TTIEQNNNAV QEDPRKTSRQ TGETPVISTR RARSTPARVM PIVLNRDSNV TSDEPPLTQP ARTSSFPVMP VILNQASNVT
0701: YDEPSVALTQ ESRTSHARIL PVTFNQATNI TSEEASVTLR RQRRNSAARV RPVLLSQATS HECPVTSVRP LRTSPARVMP TKLNQSVNMT SDTSHIASMH
0801: RVSPTQMLAT PTVIDQVADM TLDETHATQI QPACDNMPQK EEPNISDRED DSDITENLML THNEFLSTLQ SRLTKLQIVR HFWERSDVKG AIGALRKLTD
0901: QSVQADVISI LTEKIEILTL DMFSQLVPVL TSLLGSRTER PVNVSLDMLL KLVAVFGTVI RSTVSAPRIV GVDLHANERL EICQICSAGL HKIQRILPVL
1001: ARRGGLITRK AQELNLVLQE P
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4I7E1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.