Factsheet for VIT_00s1397g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	94.69	61.61
KRH21526	Soybean	cytosol, peroxisome	49.85	28.21
CDY54233	Canola	golgi	14.45	26.34
KRH10790	Soybean	cytosol	56.34	23.15
CDY34658	Canola	mitochondrion	41.59	18.41
Solyc02g078800.2.1	Tomato	extracellular	51.03	16.81
VIT_10s0071g01150.t01	Wine grape	cytosol	38.35	16.31
CDY34846	Canola	nucleus	41.89	15.57
AT1G11160.1	Thale cress	cytosol	44.25	14.69
VIT_13s0064g00330.t01	Wine grape	extracellular	5.6	14.5
Bra031445.1-P	Field mustard	cytosol	47.2	14.26
CDY52222	Canola	cytosol	47.2	14.26
AT1G61210.1	Thale cress	cytosol	49.56	14.23
Os01t0780400-02	Rice	cytosol	35.1	14.2
CDY03812	Canola	cytosol	46.9	14.16
Zm00001d012620_P025	Maize	cytosol	34.22	13.91
TraesCS3D01G313800.1	Wheat	cytosol	33.92	13.89
TraesCS3A01G317500.1	Wheat	cytosol	33.92	13.84
TraesCS3B01G349000.2	Wheat	cytosol	33.63	13.72
CDY15006	Canola	cytosol	41.0	13.71
GSMUA_Achr1P08830_001	Banana	cytosol	38.94	13.64
OQU87670	Sorghum	cytosol	33.33	13.58
KRH21524	Soybean	cytosol	7.96	12.0
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	33.92	11.92
VIT_07s0151g00960.t01	Wine grape	cytosol	5.6	6.03
VIT_05s0094g00800.t01	Wine grape	cytosol	5.9	5.81
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	5.01	5.76
VIT_07s0205g00150.t01	Wine grape	cytosol	5.31	5.75
VIT_09s0002g01580.t01	Wine grape	cytosol	4.72	5.35
VIT_13s0064g00360.t01	Wine grape	nucleus	6.19	4.4
VIT_11s0016g02220.t01	Wine grape	cytosol	4.72	4.07
VIT_18s0164g00020.t01	Wine grape	nucleus	3.83	3.32
VIT_17s0000g09750.t01	Wine grape	cytosol	4.42	2.9
VIT_05s0077g02310.t01	Wine grape	cytosol	4.13	2.89
VIT_13s0019g00220.t01	Wine grape	nucleus	5.6	2.46

Protein Annotations

EntrezGene:100853117	wikigene:100853117	MapMan:13.4.4.2.2	Gene3D:2.130.10.10	ProteinID:CBI25907	ProteinID:CBI25907.3
UniProt:D7T5X6	EMBL:FN595596	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100853117	wikigene:LOC100853117	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19845	PANTHER:PTHR19845:SF5	SUPFAM:SSF50978	UniParc:UPI0001BE2E73	ArrayExpress:VIT_00s1397g00010	EnsemblPlantsGene:VIT_00s1397g00010
EnsemblPlants:VIT_00s1397g00010.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_003635573
RefSeq:XP_003635573.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:39003345..39008148

Molecular Weight (calculated)

37267.4 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.527

Length

339 amino acids

Sequence
(BLAST)

001: YINGFPGSAD RTVKFWDLET FELIGSARPE ATGVRSITFH PDGRTLFCGL DDSLKVYSWE PVVCHDAVDM GWSILGDICI HEGKLLGCSY YRNSVGVWVA
101: DISQIEPYGS GLLSKKNGCV ERKFDLQESH SVEKVGSSVR STSGFRSMSP DYDTKEIKNI YVDSSGGNSV ASQKVRSFNT PKVLFPSDSK EITNLPTQKH
201: SPGVGLHAKT QGRAITRSFV VPSIVTRDNS DGKDLANSRR ESITPARANT GMSLKTSHIR RPSNSKYEAE RLLMAVESGS FDSMPNDLDS AMKQNFHSRL
301: VVDDEASESC EEKNSNITSV AEKFEKVLSP QASSNQENS

Best Arabidopsis Sequence Match ( AT1G61210.1 )
(BLAST)

0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.