Factsheet for VIT_13s0064g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P29050_001	Banana	nucleus	87.21	87.03
Solyc03g112530.2.1	Tomato	nucleus	87.21	86.49
PGSC0003DMT400046634	Potato	cytosol	87.21	86.49
AT5G52820.1	Thale cress	cytosol	78.41	79.07
CDX96156	Canola	cytosol	78.83	78.99
Bra022611.1-P	Field mustard	cytosol	78.2	78.36
CDX84790	Canola	cytosol	78.2	78.36
CDY27046	Canola	cytosol	78.2	78.36
TraesCS1A01G443600.1	Wheat	cytosol	76.94	77.26
TraesCS1B01G478100.1	Wheat	cytosol	76.73	76.89
TraesCS1D01G451700.1	Wheat	cytosol	76.52	76.84
EES18812	Sorghum	cytosol	76.52	76.2
Bra003111.1-P	Field mustard	nucleus	36.06	74.14
Zm00001d039211_P006	Maize	cytosol	76.94	73.84
CDY52843	Canola	nucleus	35.85	73.71
HORVU1Hr1G095080.1	Barley	cytosol, plastid	76.1	72.17
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	48.01	71.79
CDY09645	Canola	cytosol	67.71	68.29
VIT_13s0064g00330.t01	Wine grape	extracellular	16.14	58.78
VIT_07s0151g00960.t01	Wine grape	cytosol	20.75	31.43
VIT_07s0205g00150.t01	Wine grape	cytosol	20.34	30.99
VIT_05s0094g00800.t01	Wine grape	cytosol	17.4	24.13
VIT_09s0002g01580.t01	Wine grape	cytosol	14.68	23.41
VIT_11s0016g02220.t01	Wine grape	cytosol	17.61	21.37
VIT_18s0164g00020.t01	Wine grape	nucleus	16.56	20.2
VIT_05s0077g02310.t01	Wine grape	cytosol	17.19	16.94
VIT_17s0000g09750.t01	Wine grape	cytosol	18.03	16.6
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	15.51	14.2
VIT_13s0019g00220.t01	Wine grape	nucleus	16.98	10.48
VIT_10s0071g01150.t01	Wine grape	cytosol	15.3	9.16
VIT_00s1397g00010.t01	Wine grape	cytosol	4.4	6.19
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	2.73	4.41
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.63	1.35

Protein Annotations

EntrezGene:100262007	wikigene:100262007	MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	ProteinID:CCB49534	ProteinID:CCB49534.1
UniProt:F6HBD2	EMBL:FN595509	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000027	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0005840	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:Gprotein_B
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100262007	wikigene:LOC100262007	InterPro:NLE
PFAM:PF00400	PFAM:PF08154	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19848	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC63614	TIGR:TC64937
UniParc:UPI00015CA510	ArrayExpress:VIT_13s0064g00360	EnsemblPlantsGene:VIT_13s0064g00360	EnsemblPlants:VIT_13s0064g00360.t01	unigene:Vvi.15214	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002276009	RefSeq:XP_002276009.1

Description

No Description!

Coordinates

chr13:-:21879764..21898935

Molecular Weight (calculated)

53239.4 Da

IEP (calculated)

8.118

GRAVY (calculated)

-0.426

Length

477 amino acids

Sequence
(BLAST)

001: MEMEIEEQGE TGKNVMCQLT DPEGNHLGPP MYLPQNAAPK ELQQIVNKLL NNEEKLPYAF YISDQELVVQ LGTYLQKNKV SVEKVLPIVY QLQAVFRIRP
101: INRCSSTIAG HTEAVLSVAF SPDGRQLASG SGDTTVRLWD LNTQTPMYTC TGHKNWVLCI AWSPDGKHLV SGSKAGELQC WDPQTGKPSG NPLIGHKKWI
201: TGISWEPVHL RAPCRRFVSS SKDGDARIWD VSLRKCVICL SGHTLAVTCV KWGGDGVIYT GSQDCTIKVW ETSQGKLIRE LKGHGHWVNS LALSTEYVLR
301: TGAFDHTGKQ YTSPEEMKEV ALERYKKMKG NAPERLVSGS DDFTMFLWEP ADSKHPKTRM TGHQQLVNHV YFSPDGQWVA SASFDKSVKL WNGTTGKFVA
401: AFRGHVGPVY QISWSADSRL LLSGSKDSTL KVWDIRTHKL KQDLPGHEDE VFAVDWSPDG EKVASGGRDR VLKLWMG

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.