Factsheet for TraesCS1A01G443600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G478100.1	Wheat	cytosol	99.37	99.16
TraesCS1D01G451700.1	Wheat	cytosol	98.95	98.95
HORVU1Hr1G095080.1	Barley	cytosol, plastid	96.42	91.05
Os10t0104500-01	Rice	cytosol	91.79	90.83
Os11t0594200-01	Rice	cytosol	90.95	90.0
EES18812	Sorghum	cytosol	89.05	88.31
Zm00001d039211_P006	Maize	cytosol	89.89	85.92
GSMUA_Achr3P29050_001	Banana	nucleus	80.42	79.92
PGSC0003DMT400046634	Potato	cytosol	78.11	77.13
Solyc03g112530.2.1	Tomato	nucleus	78.11	77.13
VIT_13s0064g00360.t01	Wine grape	nucleus	77.26	76.94
KRH08668	Soybean	nucleus	76.84	76.04
KRH70275	Soybean	nucleus	76.63	75.83
AT5G52820.1	Thale cress	cytosol	72.84	73.15
Bra009201.1-P	Field mustard	nucleus	65.05	64.38
CDX98931	Canola	nucleus	64.21	63.54
CDX70097	Canola	cytosol	61.68	63.42
VIT_13s0064g00330.t01	Wine grape	extracellular	15.16	54.96
CDY08014	Canola	mitochondrion	10.32	48.04
CDX77842	Canola	cytosol, nucleus, peroxisome	9.26	44.44
TraesCS4A01G258000.1	Wheat	cytosol	22.32	32.82
TraesCS2A01G196900.1	Wheat	plastid	20.84	29.91
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	13.05	28.18
TraesCS6A01G250200.1	Wheat	cytosol	15.58	24.67
TraesCS7A01G499900.1	Wheat	nucleus	17.68	24.28
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	19.16	22.92
TraesCS3A01G175600.2	Wheat	plastid	17.89	17.78
TraesCS5A01G293600.2	Wheat	nucleus	17.05	11.39
TraesCS3A01G317500.1	Wheat	cytosol	17.89	10.23
TraesCS1A01G164300.1	Wheat	cytosol	16.21	9.46
TraesCS2A01G592600.1	Wheat	cytosol	17.26	8.86

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Gprotein_B	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:NLE	PFAM:PF00400
PFAM:PF08154	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19848	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS1A01G443600	EnsemblPlants:TraesCS1A01G443600.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	:

Description

No Description!

Coordinates

chr1A:-:591948919..591953855

Molecular Weight (calculated)

52283.0 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.307

Length

475 amino acids

Sequence
(BLAST)

001: MDAAGGNGSS SSVMCQLVSA EGEQLGAALY LPHNVGPPQL QDIVNQLLHN EDKLPYAFYV GDEELSVQLG AFMQRNNATA EVTLRIVYQP QAVFRIRPVN
101: RCSATIAGHT EAVLAVSFSP DGRCLASGSG DTTVRFWDLS TQTPLYTCKG HKNWVLCIAW SPDGKHLVSG SKSGELILWD PKTGNQLGTP LTGHRKWITA
201: VSWEPVHLQS PSRRFVSASK DGDARIWDIT TKKCVISLSG HTNAVTCVKW GGDGLIYTGS EDCLIKVWET TQGKLVKTLQ GHGHWVNSLA LSTEYVLRTG
301: AYDHTGKTFS SPEEMKEAAL ARYEKMRGNA PERLVSGSDD FTMFLWEPTI SKQPKARMTG HQKVVNHVYF SPDGQWLASA SFDKSVKLWN GITGKFVAAF
401: RGHVADVYQI SWSADSRLLL SGSKDSTLKV WDIRARKLKQ DLPGHADEVY AVDWSPDGEK VVSGGKDRVL KLWMN

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.