Factsheet for TraesCS1A01G358200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
cytoskeleton 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G374800.1	Wheat	cytosol	92.73	51.78
HORVU3Hr1G013230.4	Barley	cytosol	93.18	51.25
TraesCS1D01G363000.1	Wheat	cytosol	90.91	50.76
KRH35009	Soybean	cytosol	30.0	47.83
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	85.0	47.1
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	73.64	40.7
Os03t0685600-01	Rice	cytosol	72.27	40.36
Zm00001d041945_P003	Maize	cytosol	73.64	38.12
GSMUA_Achr11P...	Banana	cytosol	59.09	37.68
VIT_11s0016g02220.t01	Wine grape	cytosol	60.0	33.59
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	60.0	33.25
VIT_18s0164g00020.t01	Wine grape	nucleus	58.64	32.99
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	59.09	32.75
Zm00001d011779_P005	Maize	cytosol	72.73	32.65
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	55.45	31.2
CDX68298	Canola	cytosol	51.82	29.31
CDY36678	Canola	cytosol	50.91	28.79
AT1G71840.1	Thale cress	nucleus	53.18	28.75
CDX96351	Canola	cytosol	51.82	28.57
CDX72834	Canola	cytosol	51.36	28.39
Bra016111.1-P	Field mustard	cytosol	50.91	28.07
Bra003910.1-P	Field mustard	cytosol	48.18	28.04
KRH37298	Soybean	cytosol	44.55	25.86
TraesCS4A01G258000.1	Wheat	cytosol	27.27	18.58
TraesCS2A01G196900.1	Wheat	plastid	25.91	17.22
TraesCS7A01G499900.1	Wheat	nucleus	25.0	15.9
TraesCS6A01G250200.1	Wheat	cytosol	19.09	14.0
TraesCS1A01G443600.1	Wheat	cytosol	28.18	13.05
TraesCS3A01G175600.2	Wheat	plastid	20.91	9.62
TraesCS5A01G293600.2	Wheat	nucleus	25.45	7.88
TraesCS1A01G164300.1	Wheat	cytosol	25.45	6.88
TraesCS3A01G317500.1	Wheat	cytosol	25.0	6.62
TraesCS2A01G592600.1	Wheat	cytosol	26.82	6.38

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS1A01G358200	EnsemblPlants:TraesCS1A01G358200.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	TIGR:cd00200	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:540195023..540198583

Molecular Weight (calculated)

23492.3 Da

IEP (calculated)

4.790

GRAVY (calculated)

0.090

Length

220 amino acids

Sequence
(BLAST)

001: MWDADTDAFV NTFAGHSNTV TCGDFTPDGE LICSGSDDAT LRIWDRESAH CSHVVGGHGF HTQGLTCLAI TWDSQSIVTG SQDSSVHIVS IKSGQVVGAL
101: VGHTNSVECI GISPRYNWVA TGSIDQTLII WDLTHQAIRS VCEHDDGVTC LAWIGSSRYV ASGCIDGTVR VWDSLSGELA RILSGHRDVV QSLAVSADCN
201: SIVSVSSDKS ARVFDISMFK

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.