Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96351 | Canola | cytosol | 93.97 | 93.73 |
| CDX68298 | Canola | cytosol | 88.19 | 90.23 |
| CDY36678 | Canola | cytosol | 87.69 | 89.72 |
| AT1G71840.1 | Thale cress | nucleus | 86.18 | 84.28 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 64.57 | 65.73 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 64.82 | 65.65 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 62.81 | 62.97 |
| PGSC0003DMT400073944 | Potato | cytoskeleton, cytosol, nucleus | 62.56 | 62.72 |
| KRG91764 | Soybean | cytoskeleton, cytosol, nucleus | 60.55 | 61.64 |
| GSMUA_Achr11P... | Banana | cytosol | 51.76 | 59.71 |
| KRH37298 | Soybean | cytosol | 53.02 | 55.67 |
| Os03t0685600-01 | Rice | cytosol | 52.01 | 52.54 |
| KXG26924 | Sorghum | cytoskeleton, cytosol, nucleus | 52.01 | 52.01 |
| TraesCS1A01G358200.1 | Wheat | cytoskeleton, cytosol, nucleus | 28.39 | 51.36 |
| TraesCS1D01G363000.1 | Wheat | cytosol | 50.25 | 50.76 |
| KRH35009 | Soybean | cytosol | 17.59 | 50.72 |
| TraesCS2D01G129200.1 | Wheat | cytoskeleton, cytosol, nucleus | 50.0 | 50.25 |
| TraesCS2A01G126700.2 | Wheat | cytoskeleton, cytosol, nucleus | 50.0 | 50.13 |
| TraesCS1B01G374800.1 | Wheat | cytosol | 49.5 | 50.0 |
| HORVU3Hr1G013230.4 | Barley | cytosol | 48.49 | 48.25 |
| Zm00001d041945_P003 | Maize | cytosol | 50.5 | 47.29 |
| Zm00001d011779_P005 | Maize | cytosol | 50.25 | 40.82 |
| TraesCS2B01G148600.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 49.5 | 40.62 |
| HORVU2Hr1G022250.4 | Barley | mitochondrion | 50.25 | 40.32 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 18.84 | 23.81 |
| CDX86957 | Canola | cytosol | 18.59 | 23.72 |
| CDX97287 | Canola | cytosol | 19.35 | 23.62 |
| CDX91316 | Canola | cytosol | 19.35 | 23.62 |
| CDX70436 | Canola | plastid | 9.3 | 22.16 |
| HORVU5Hr1G075920.16 | Barley | nucleus | 39.45 | 21.36 |
| CDY08856 | Canola | cytosol | 15.33 | 20.54 |
| CDX84544 | Canola | cytosol | 15.33 | 20.33 |
| CDX67810 | Canola | cytosol | 16.83 | 18.66 |
| CDX72090 | Canola | mitochondrion | 14.82 | 17.66 |
| CDY09645 | Canola | cytosol | 20.85 | 17.55 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 13.57 | 16.93 |
| CDY54233 | Canola | golgi | 7.79 | 16.67 |
| CDY17912 | Canola | cytosol, golgi | 17.09 | 16.31 |
| CDY27046 | Canola | cytosol | 19.35 | 16.18 |
| CDX84790 | Canola | cytosol | 19.35 | 16.18 |
| CDX96156 | Canola | cytosol | 19.35 | 16.18 |
| CDX79802 | Canola | cytosol, golgi | 16.83 | 16.14 |
| CDY52843 | Canola | nucleus | 9.05 | 15.52 |
| CDY44171 | Canola | cytosol | 6.03 | 15.48 |
| CDX98931 | Canola | nucleus | 18.34 | 15.21 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 16.58 | 14.9 |
| CDY05801 | Canola | cytosol | 18.09 | 14.34 |
| CDX70097 | Canola | cytosol | 16.33 | 14.07 |
| CDY34965 | Canola | cytosol | 16.33 | 13.83 |
| CDX90556 | Canola | cytosol | 16.58 | 13.72 |
| CDY09730 | Canola | cytosol | 16.58 | 13.72 |
| CDY27174 | Canola | cytosol | 5.03 | 13.07 |
| CDY28352 | Canola | cytosol | 15.58 | 13.0 |
| CDY05802 | Canola | mitochondrion | 18.34 | 12.7 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 3.02 | 12.12 |
| CDY08014 | Canola | mitochondrion | 3.02 | 11.76 |
| CDX91118 | Canola | nucleus | 17.34 | 10.71 |
| CDX85646 | Canola | nucleus | 17.09 | 10.51 |
| CDX70506 | Canola | nucleus | 16.58 | 10.49 |
| CDX78524 | Canola | nucleus | 16.58 | 9.88 |
| CDY34658 | Canola | mitochondrion | 18.84 | 9.79 |
| CDX81101 | Canola | cytosol | 17.59 | 8.32 |
| CDY60225 | Canola | cytosol | 17.34 | 8.26 |
| CDX88026 | Canola | cytosol | 16.83 | 8.08 |
| CDY34846 | Canola | nucleus | 18.34 | 8.0 |
| CDX80363 | Canola | cytosol | 17.09 | 8.0 |
| CDY15006 | Canola | cytosol | 16.58 | 6.51 |
| CDY01533 | Canola | plastid | 2.51 | 6.33 |
| CDY52222 | Canola | cytosol | 17.34 | 6.15 |
| CDY03812 | Canola | cytosol | 16.83 | 5.97 |
| CDY69403 | Canola | nucleus | 2.26 | 4.86 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EnsemblPlants:CDX72834 | ProteinID:CDX72834 | ProteinID:CDX72834.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00103229001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19857 | PANTHER:PTHR19857:SF8 |
| InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 | SUPFAM:SSF50998 | UniParc:UPI0004EE7349 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | SEG:seg | : | : | : |
Description
BnaC06g32820D
Coordinates
chrLK031797:+:534408..536644
Molecular Weight (calculated)
42386.6 Da
IEP (calculated)
4.071
GRAVY (calculated)
-0.212
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNTAKSNNP AVEEEEDDDE GDVFLGESDV IHEFDVDGED LPDADDDDND GDEEFDENDD SVHTFTGHKG ELYALACSPT DPTLVATGGG DDKGFLFKIG
101: NGDWAAELPG HKDSVSSLAF SYDGQLLASG GLDGVVQIFD SSSGALKCVL DGPGGGIEWV KWHPRGHIVL AGSEDCSMWM WNADKEAYLN MFAGHNQSVT
201: CGDFTPDGKL ICTGSDDASL IVWNPKTCHP YHTEGLICLD INSNSSLVIS GSKDGSVHIV NIVTGKVVSS LTSHTESVEC VKFSPSSATI PMAATGGMDK
301: KLIIWDLQHS TPRFICDHAE GVTCVTWVGT SKYLATGCAD GTVSVWDSLL GNCVHTFHGH QDAVQAISVS ANTEFVVSVS VDNTARVYET SEFLNKTA
101: NGDWAAELPG HKDSVSSLAF SYDGQLLASG GLDGVVQIFD SSSGALKCVL DGPGGGIEWV KWHPRGHIVL AGSEDCSMWM WNADKEAYLN MFAGHNQSVT
201: CGDFTPDGKL ICTGSDDASL IVWNPKTCHP YHTEGLICLD INSNSSLVIS GSKDGSVHIV NIVTGKVVSS LTSHTESVEC VKFSPSSATI PMAATGGMDK
301: KLIIWDLQHS TPRFICDHAE GVTCVTWVGT SKYLATGCAD GTVSVWDSLL GNCVHTFHGH QDAVQAISVS ANTEFVVSVS VDNTARVYET SEFLNKTA
001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.