Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88026 | Canola | cytosol | 94.59 | 96.98 |
| Bra009683.1-P | Field mustard | cytosol | 96.35 | 90.4 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 88.0 | 89.37 |
| CDX81101 | Canola | cytosol | 73.65 | 74.44 |
| CDY60225 | Canola | cytosol | 72.47 | 73.77 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 34.94 | 62.79 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 58.47 | 62.36 |
| KRG93160 | Soybean | cytosol | 55.53 | 62.19 |
| KRH56498 | Soybean | cytosol | 55.29 | 61.92 |
| Solyc02g021360.2.1 | Tomato | cytosol | 56.12 | 59.77 |
| CDY54233 | Canola | golgi | 12.71 | 58.06 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 51.06 | 54.73 |
| PGSC0003DMT400065114 | Potato | cytosol | 52.0 | 54.5 |
| Solyc04g008720.2.1 | Tomato | cytosol | 51.88 | 54.44 |
| TraesCS2B01G591600.2 | Wheat | cytosol | 50.24 | 46.56 |
| KXG27434 | Sorghum | cytosol | 50.12 | 46.3 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 50.35 | 46.27 |
| TraesCS2A01G592600.1 | Wheat | cytosol | 50.24 | 46.16 |
| Zm00001d026621_P006 | Maize | cytosol | 49.41 | 46.15 |
| Zm00001d001828_P033 | Maize | cytosol | 49.76 | 45.88 |
| Os04t0677700-00 | Rice | cytosol | 45.76 | 43.71 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 51.53 | 41.79 |
| CDY34658 | Canola | mitochondrion | 36.71 | 40.73 |
| CDY34846 | Canola | nucleus | 36.24 | 33.77 |
| CDY52222 | Canola | cytosol | 38.47 | 29.14 |
| CDY03812 | Canola | cytosol | 38.35 | 29.03 |
| CDY15006 | Canola | cytosol | 33.88 | 28.4 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 9.18 | 24.76 |
| CDX86957 | Canola | cytosol | 9.06 | 24.68 |
| CDX67810 | Canola | cytosol | 8.94 | 21.17 |
| CDX91316 | Canola | cytosol | 7.88 | 20.55 |
| CDX97287 | Canola | cytosol | 7.88 | 20.55 |
| CDX70436 | Canola | plastid | 3.88 | 19.76 |
| CDX72090 | Canola | mitochondrion | 7.65 | 19.46 |
| CDX79802 | Canola | cytosol, golgi | 9.18 | 18.8 |
| CDY17912 | Canola | cytosol, golgi | 9.18 | 18.7 |
| CDY36678 | Canola | cytosol | 8.0 | 17.48 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 6.47 | 17.24 |
| CDX68298 | Canola | cytosol | 7.88 | 17.22 |
| CDX72834 | Canola | cytosol | 8.0 | 17.09 |
| CDX84544 | Canola | cytosol | 6.0 | 17.0 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 8.82 | 16.93 |
| CDY08856 | Canola | cytosol | 5.88 | 16.84 |
| CDX96351 | Canola | cytosol | 7.88 | 16.79 |
| CDX96156 | Canola | cytosol | 9.06 | 16.18 |
| CDY27046 | Canola | cytosol | 9.06 | 16.18 |
| CDX84790 | Canola | cytosol | 9.06 | 16.18 |
| CDY09645 | Canola | cytosol | 8.94 | 16.07 |
| CDY52843 | Canola | nucleus | 4.35 | 15.95 |
| CDY27174 | Canola | cytosol | 2.82 | 15.69 |
| CDY44171 | Canola | cytosol | 2.82 | 15.48 |
| CDX90556 | Canola | cytosol | 8.47 | 14.97 |
| CDY09730 | Canola | cytosol | 8.47 | 14.97 |
| CDY08014 | Canola | mitochondrion | 1.76 | 14.71 |
| CDX98931 | Canola | nucleus | 8.12 | 14.38 |
| CDX70097 | Canola | cytosol | 7.76 | 14.29 |
| CDY05801 | Canola | cytosol | 8.35 | 14.14 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 1.65 | 14.14 |
| CDY28352 | Canola | cytosol | 7.88 | 14.05 |
| CDY34965 | Canola | cytosol | 7.76 | 14.04 |
| CDX91118 | Canola | nucleus | 10.59 | 13.98 |
| CDX85646 | Canola | nucleus | 10.59 | 13.91 |
| CDX70506 | Canola | nucleus | 10.24 | 13.83 |
| CDX78524 | Canola | nucleus | 10.59 | 13.47 |
| CDY05802 | Canola | mitochondrion | 8.71 | 12.87 |
| CDY01533 | Canola | plastid | 0.94 | 5.06 |
| CDY69403 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:A0A078CYZ7 | EnsemblPlants:CDX80363 | ProteinID:CDX80363 | ProteinID:CDX80363.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00133425001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 | PFAM:PF13925 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EEFED6 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaC07g30810D
Coordinates
chrLK031821:-:42673..47557
Molecular Weight (calculated)
93101.8 Da
IEP (calculated)
8.143
GRAVY (calculated)
-0.444
Length
850 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTTTLQGF RFLHDFYQAS LQATYPFTCL LFEEFVAHSA AVNCLKIGRK SSRVLVTGGE DHKVNLWAIG KPNAILSLYG HSSGIDSVTF DASEVLVAAG
101: AASGTIKLWD LEEAKLVRTL TGHRSNCISV DFHPFGEFFA SGSLDTNLKI WDLRKKGPIH TYKGHTRGVN VLRFTPDGRW VVSGGEDNIV KVWDLTAGKL
201: LTEFKCHEGQ IQSLDFHPHE FLLATGSADR TVKFWDLETF ELIGSGGPET SGVRCLSFNP DGKTVLCGLQ ESLKIFSWEP IRCHDGVDVG WSRLSDMNVH
301: EGKLLGCSYN QNCVGVWVVD LSRTEPCNTG DADQSNGQAE KKSGSGRDSV VLNDNNSKTI PGKLSVSQNV DPLLKETKSL GRLSVTQNSD PSTKETKAVG
401: RSSTSHSSES KPLGRLSVSQ NSDVAKESRT LSSTGSVPST PHRVSLASVS KAAVSNAATS RRNFTKANPK GNPVNKAADF IQVFVPREDP RIEQAAESRA
501: ELDIIARTMP YSLQAADSRR SPSSKNNQDL PNAPVLEMSD SQPVEPSNIP DKNTFPGGKG GMRGAAERSI NDFRYKRYGR SNSRSRMGSP PRNHDENYDL
601: VSHKSSREPS PTESRKGGRF QSLVINRERR GRFSNFEGPV SNFPGGGNAA APNIHPSNMF KQRGNHMPVE QGIESPSEDN IVEDIMGKHD QFVSSMQSRL
701: AKLQVVRRYW ERNDVKNTIG SMEKMADNAV TADVLSIITE RNEIMTLDTC TSLLPILAAL LASDMDQHLN VSLDLLLKLV RMYGSPIYSS LSAPASVGVD
801: IEAEQRIERY SRCFVELEKV KACLPSLSRR GGLVAKSVLE LNLAFQEVSS
101: AASGTIKLWD LEEAKLVRTL TGHRSNCISV DFHPFGEFFA SGSLDTNLKI WDLRKKGPIH TYKGHTRGVN VLRFTPDGRW VVSGGEDNIV KVWDLTAGKL
201: LTEFKCHEGQ IQSLDFHPHE FLLATGSADR TVKFWDLETF ELIGSGGPET SGVRCLSFNP DGKTVLCGLQ ESLKIFSWEP IRCHDGVDVG WSRLSDMNVH
301: EGKLLGCSYN QNCVGVWVVD LSRTEPCNTG DADQSNGQAE KKSGSGRDSV VLNDNNSKTI PGKLSVSQNV DPLLKETKSL GRLSVTQNSD PSTKETKAVG
401: RSSTSHSSES KPLGRLSVSQ NSDVAKESRT LSSTGSVPST PHRVSLASVS KAAVSNAATS RRNFTKANPK GNPVNKAADF IQVFVPREDP RIEQAAESRA
501: ELDIIARTMP YSLQAADSRR SPSSKNNQDL PNAPVLEMSD SQPVEPSNIP DKNTFPGGKG GMRGAAERSI NDFRYKRYGR SNSRSRMGSP PRNHDENYDL
601: VSHKSSREPS PTESRKGGRF QSLVINRERR GRFSNFEGPV SNFPGGGNAA APNIHPSNMF KQRGNHMPVE QGIESPSEDN IVEDIMGKHD QFVSSMQSRL
701: AKLQVVRRYW ERNDVKNTIG SMEKMADNAV TADVLSIITE RNEIMTLDTC TSLLPILAAL LASDMDQHLN VSLDLLLKLV RMYGSPIYSS LSAPASVGVD
801: IEAEQRIERY SRCFVELEKV KACLPSLSRR GGLVAKSVLE LNLAFQEVSS
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.