Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026621_P006 | Maize | cytosol | 91.3 | 92.31 |
| Zm00001d001828_P033 | Maize | cytosol | 92.07 | 91.87 |
| TraesCS2A01G592600.1 | Wheat | cytosol | 81.52 | 81.08 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 81.3 | 80.86 |
| TraesCS2B01G591600.2 | Wheat | cytosol | 79.89 | 80.15 |
| Os04t0677700-00 | Rice | cytosol | 76.3 | 78.88 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 35.11 | 68.29 |
| KRH56498 | Soybean | cytosol | 50.87 | 61.66 |
| KRG93160 | Soybean | cytosol | 50.87 | 61.66 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 52.83 | 60.98 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 50.65 | 58.76 |
| Solyc02g021360.2.1 | Tomato | cytosol | 49.57 | 57.14 |
| PGSC0003DMT400065114 | Potato | cytosol | 47.39 | 53.76 |
| Solyc04g008720.2.1 | Tomato | cytosol | 47.17 | 53.58 |
| AT5G08390.1 | Thale cress | cytosol | 47.39 | 51.97 |
| CDX88026 | Canola | cytosol | 46.74 | 51.87 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 47.17 | 51.85 |
| CDY60225 | Canola | cytosol | 46.96 | 51.74 |
| CDX81101 | Canola | cytosol | 47.07 | 51.49 |
| Bra005990.1-P | Field mustard | cytosol | 47.28 | 51.3 |
| CDX80363 | Canola | cytosol | 46.3 | 50.12 |
| Bra009683.1-P | Field mustard | cytosol | 46.41 | 47.13 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 51.52 | 45.23 |
| OQU91573 | Sorghum | plastid | 40.33 | 42.45 |
| OQU87670 | Sorghum | cytosol | 37.07 | 40.99 |
| EER90141 | Sorghum | plastid | 8.48 | 22.74 |
| OQU91075 | Sorghum | cytosol | 7.83 | 22.57 |
| KXG36525 | Sorghum | plastid | 7.61 | 21.28 |
| EES05216 | Sorghum | cytosol | 5.98 | 18.15 |
| EES18812 | Sorghum | cytosol | 8.91 | 17.12 |
| KXG26924 | Sorghum | cytoskeleton, cytosol, nucleus | 7.17 | 16.58 |
| KXG25821 | Sorghum | cytosol | 7.83 | 15.03 |
| EES04226 | Sorghum | nucleus | 10.11 | 13.03 |
| KXG37566 | Sorghum | plastid | 7.72 | 12.35 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | UniProt:A0A1B6PP41 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0051013 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KXG27434 | ProteinID:KXG27434 |
| ProteinID:KXG27434.1 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 | PFAM:PF13925 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | SMART:SM00320 | EnsemblPlantsGene:SORBI_3006G267500 |
| SUPFAM:SSF50978 | UniParc:UPI0003C67BA0 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:60067563..60075817
Molecular Weight (calculated)
100364.0 Da
IEP (calculated)
8.316
GRAVY (calculated)
-0.439
Length
920 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGED HKVNLWAIGK PNSILSLSGH TSAVESVGFD STEVFVAAGA ASGTIKLWDL EEAKIVRTLT
101: GHRSNCMSVD FHPFGEFFAS GSLDTNLKIW DIRRKNCIHT YKGHTRGVNA IRFTPDGRWV VSGGEDNIVK LWDLTAGKLL HEFKCHEGQI QCIDFHPHEF
201: LLATGSADKT VKFWDLETFE LIGSTGPETT GVRSMTFNPD GRSLLCGLHE SLKVFSWEPI RCHDTVDVGW SKLADLNVHE GKLLGCSFNQ SCVGIWVVDL
301: TRLEPYATGT STKLNGHSEL KTVSSGTLPL QNDSGSRANI GRSSTLQTSE NNLKASSGRL SAQNSDSAPK ETKLAPSSGL VPSTPQRAGV SSNNRSVGNS
401: AFQSGGTTLK RSSLRSNSAS NVHNFSKADV VPVIVPRTSS GGELATDSRS DAADVAPVLP KVTRRVDPAT DSRKESNDVD LVIPKASSRV EIASDSAPVS
501: TFKSGRRLEA APDSKKESAD TTPVVPNPRA NARMEMASDS APALSKANRK LDSGTDSKKE SVDAVPAIVP RANSRMEMNS DSRREPSAGR VSPFRIQSRY
601: AELRKLTHAK IDANKVDSGS KITETDDFNC QIFLPRRNGV FQISSEESRE DVKCGPADRM GFSNSSEPNA SVRSENYVSR MRKPRDNCYI EVSRAGRARS
701: NVSNWEGRDQ SPSHEEPTTS SSSLAPTGRP YSSRGSKQAS ETPIIVSDED VLSLLMEQHD LFLSSTKSRL TKLQIIHQMW ERNDIRGVLS AMERMGDHAV
801: CADMASVLME KSEIITLDLC TSILPAVTDL LESKIDRHLS VTLELLVKLV RTFGPMIHST VSSGPCVGVD LEAEQRRERC NLCFIELEKA KNKLPSLTRR
901: KGAVANAAQE LALVFQEIMS
101: GHRSNCMSVD FHPFGEFFAS GSLDTNLKIW DIRRKNCIHT YKGHTRGVNA IRFTPDGRWV VSGGEDNIVK LWDLTAGKLL HEFKCHEGQI QCIDFHPHEF
201: LLATGSADKT VKFWDLETFE LIGSTGPETT GVRSMTFNPD GRSLLCGLHE SLKVFSWEPI RCHDTVDVGW SKLADLNVHE GKLLGCSFNQ SCVGIWVVDL
301: TRLEPYATGT STKLNGHSEL KTVSSGTLPL QNDSGSRANI GRSSTLQTSE NNLKASSGRL SAQNSDSAPK ETKLAPSSGL VPSTPQRAGV SSNNRSVGNS
401: AFQSGGTTLK RSSLRSNSAS NVHNFSKADV VPVIVPRTSS GGELATDSRS DAADVAPVLP KVTRRVDPAT DSRKESNDVD LVIPKASSRV EIASDSAPVS
501: TFKSGRRLEA APDSKKESAD TTPVVPNPRA NARMEMASDS APALSKANRK LDSGTDSKKE SVDAVPAIVP RANSRMEMNS DSRREPSAGR VSPFRIQSRY
601: AELRKLTHAK IDANKVDSGS KITETDDFNC QIFLPRRNGV FQISSEESRE DVKCGPADRM GFSNSSEPNA SVRSENYVSR MRKPRDNCYI EVSRAGRARS
701: NVSNWEGRDQ SPSHEEPTTS SSSLAPTGRP YSSRGSKQAS ETPIIVSDED VLSLLMEQHD LFLSSTKSRL TKLQIIHQMW ERNDIRGVLS AMERMGDHAV
801: CADMASVLME KSEIITLDLC TSILPAVTDL LESKIDRHLS VTLELLVKLV RTFGPMIHST VSSGPCVGVD LEAEQRRERC NLCFIELEKA KNKLPSLTRR
901: KGAVANAAQE LALVFQEIMS
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.