Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81101 | Canola | cytosol | 95.21 | 94.53 |
| Bra005990.1-P | Field mustard | cytosol | 94.49 | 93.04 |
| AT5G08390.1 | Thale cress | cytosol | 85.15 | 84.74 |
| CDX88026 | Canola | cytosol | 74.13 | 74.67 |
| CDX80363 | Canola | cytosol | 73.77 | 72.47 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 36.17 | 63.85 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 59.4 | 62.23 |
| KRG93160 | Soybean | cytosol | 55.45 | 61.0 |
| KRH56498 | Soybean | cytosol | 54.85 | 60.34 |
| CDY54233 | Canola | golgi | 13.29 | 59.68 |
| Solyc02g021360.2.1 | Tomato | cytosol | 54.49 | 57.02 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 52.46 | 55.23 |
| Solyc04g008720.2.1 | Tomato | cytosol | 51.74 | 53.33 |
| PGSC0003DMT400065114 | Potato | cytosol | 51.5 | 53.02 |
| KXG27434 | Sorghum | cytosol | 51.74 | 46.96 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 51.38 | 46.38 |
| Zm00001d026621_P006 | Maize | cytosol | 50.54 | 46.37 |
| Zm00001d001828_P033 | Maize | cytosol | 51.14 | 46.31 |
| TraesCS2A01G592600.1 | Wheat | cytosol | 51.26 | 46.27 |
| TraesCS2B01G591600.2 | Wheat | cytosol | 50.54 | 46.02 |
| Os04t0677700-00 | Rice | cytosol | 47.54 | 44.61 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 51.86 | 41.32 |
| CDY34658 | Canola | mitochondrion | 37.6 | 40.99 |
| CDY34846 | Canola | nucleus | 37.13 | 33.99 |
| CDY52222 | Canola | cytosol | 39.88 | 29.68 |
| CDY03812 | Canola | cytosol | 39.64 | 29.47 |
| CDY15006 | Canola | cytosol | 34.85 | 28.7 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 9.46 | 25.08 |
| CDX86957 | Canola | cytosol | 9.34 | 25.0 |
| CDX70436 | Canola | plastid | 4.43 | 22.16 |
| CDX91316 | Canola | cytosol | 8.5 | 21.78 |
| CDX97287 | Canola | cytosol | 8.5 | 21.78 |
| CDX67810 | Canola | cytosol | 8.5 | 19.78 |
| CDX72090 | Canola | mitochondrion | 7.66 | 19.16 |
| CDX79802 | Canola | cytosol, golgi | 8.74 | 17.59 |
| CDY08856 | Canola | cytosol | 6.23 | 17.51 |
| CDY17912 | Canola | cytosol, golgi | 8.74 | 17.51 |
| CDX68298 | Canola | cytosol | 8.14 | 17.48 |
| CDX72834 | Canola | cytosol | 8.26 | 17.34 |
| CDX84544 | Canola | cytosol | 6.23 | 17.33 |
| CDY36678 | Canola | cytosol | 8.02 | 17.22 |
| CDX96351 | Canola | cytosol | 8.14 | 17.04 |
| CDY50395 | Canola | cytosol, extracellular, golgi, mitochondrion | 6.47 | 16.93 |
| CDY09645 | Canola | cytosol | 9.46 | 16.7 |
| CDX98392 | Canola | endoplasmic reticulum, extracellular | 8.5 | 16.03 |
| CDY52843 | Canola | nucleus | 4.43 | 15.95 |
| CDX84790 | Canola | cytosol | 8.98 | 15.76 |
| CDX96156 | Canola | cytosol | 8.98 | 15.76 |
| CDY27046 | Canola | cytosol | 8.98 | 15.76 |
| CDX90556 | Canola | cytosol | 8.74 | 15.18 |
| CDY09730 | Canola | cytosol | 8.74 | 15.18 |
| CDY44171 | Canola | cytosol | 2.75 | 14.84 |
| CDX98931 | Canola | nucleus | 8.38 | 14.58 |
| CDX70097 | Canola | cytosol | 8.02 | 14.5 |
| CDY34965 | Canola | cytosol | 8.14 | 14.47 |
| CDX70506 | Canola | nucleus | 10.9 | 14.47 |
| CDY28352 | Canola | cytosol | 8.26 | 14.47 |
| CDX91118 | Canola | nucleus | 11.14 | 14.44 |
| CDX85646 | Canola | nucleus | 11.14 | 14.37 |
| CDY05801 | Canola | cytosol | 8.5 | 14.14 |
| CDX77842 | Canola | cytosol, nucleus, peroxisome | 1.68 | 14.14 |
| CDX78524 | Canola | nucleus | 11.02 | 13.77 |
| CDY27174 | Canola | cytosol | 2.51 | 13.73 |
| CDY08014 | Canola | mitochondrion | 1.68 | 13.73 |
| CDY05802 | Canola | mitochondrion | 8.86 | 12.87 |
| CDY01533 | Canola | plastid | 1.2 | 6.33 |
| CDY69403 | Canola | nucleus | 0.48 | 2.16 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | GO:A0A078J2Z5 | UniProt:A0A078J2Z5 | EnsemblPlants:CDY60225 | ProteinID:CDY60225 |
| ProteinID:CDY60225.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 |
| GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | EnsemblPlantsGene:GSBRNA2T00028358001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 |
| PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EEC43F | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : |
Description
BnaA03g55700DKatanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A078J2Z5]
Coordinates
chrLK033857:+:1332..6513
Molecular Weight (calculated)
91681.9 Da
IEP (calculated)
8.537
GRAVY (calculated)
-0.499
Length
835 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR KLVTGGEDHK VNLWAIGKPN AILSLQGHSS GVDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVNFH PFGEFFASGS RDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGQIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLHESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNFHQERISS SGRDQPVLND NSSKVMLRNG SQKVNPSSKE TKSHGRLSVP QNLDPSPKET KSTGRSSVSQ SSDPLIKEPK PLGRLSVTHS
401: SDAVKESLTS SSTGSTSGSP RRVTSTSSPK VSSGVSTVVS TAASSTRNNF KANLPIVKKG DFSPVIVPRT DPVIEQAVES RAELDIIGRT MPYSLQSKAA
501: DFRRLSSIRN EPDLPTDSPL ERSHSHPTEP SKLQDGDAFT SEESGTWDTA ERKSKDNRYR GFGRFNSRSL LRSPPRNHDE NTADLNSFSG NRDQSPIESR
601: RGGRLHSLAQ YRERRGRVFN SEGGHVSSSS GGNMTTSNIR PSNMLNQRGN HVPVDEGITS DSEEDKAAEV MGQHDQFVSS MQSRLAKLQV VRRYWERNDV
701: KNSISSIEKM ADNAVVADVL VIITERAEIL TLDTCTSLLP LMSALLGSNM DRHLSVCLDL LLKLVRMYGS QIYLSLSAPS SVGVDIEAEQ RMERYSRCFV
801: ELEKIKACLP SLERRGGLVA KTIHELNLIF QEVSS
101: RSNCISVNFH PFGEFFASGS RDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGQIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLHESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNFHQERISS SGRDQPVLND NSSKVMLRNG SQKVNPSSKE TKSHGRLSVP QNLDPSPKET KSTGRSSVSQ SSDPLIKEPK PLGRLSVTHS
401: SDAVKESLTS SSTGSTSGSP RRVTSTSSPK VSSGVSTVVS TAASSTRNNF KANLPIVKKG DFSPVIVPRT DPVIEQAVES RAELDIIGRT MPYSLQSKAA
501: DFRRLSSIRN EPDLPTDSPL ERSHSHPTEP SKLQDGDAFT SEESGTWDTA ERKSKDNRYR GFGRFNSRSL LRSPPRNHDE NTADLNSFSG NRDQSPIESR
601: RGGRLHSLAQ YRERRGRVFN SEGGHVSSSS GGNMTTSNIR PSNMLNQRGN HVPVDEGITS DSEEDKAAEV MGQHDQFVSS MQSRLAKLQV VRRYWERNDV
701: KNSISSIEKM ADNAVVADVL VIITERAEIL TLDTCTSLLP LMSALLGSNM DRHLSVCLDL LLKLVRMYGS QIYLSLSAPS SVGVDIEAEQ RMERYSRCFV
801: ELEKIKACLP SLERRGGLVA KTIHELNLIF QEVSS
001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.