CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, extracellular, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
extracellular 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022611.1-P	Field mustard	cytosol	82.13	55.04
CDX96156	Canola	cytosol	82.13	55.04
CDX84790	Canola	cytosol	82.13	55.04
CDY27046	Canola	cytosol	82.13	55.04
VIT_13s0064g00330.t01	Wine grape	extracellular	20.38	49.62
Solyc03g112530.2.1	Tomato	nucleus	72.41	48.02
PGSC0003DMT400046634	Potato	cytosol	72.41	48.02
VIT_13s0064g00360.t01	Wine grape	nucleus	71.79	48.01
KRH70275	Soybean	nucleus	72.1	47.92
KRH08668	Soybean	nucleus	71.16	47.29
GSMUA_Achr3P29050_001	Banana	nucleus	70.85	47.28
CDX70097	Canola	cytosol	64.26	44.37
CDX98931	Canola	nucleus	65.52	43.54
CDY09645	Canola	cytosol	64.26	43.34
CDY52843	Canola	nucleus	27.9	38.36
CDX77842	Canola	cytosol, nucleus, peroxisome	10.97	35.35
CDY08014	Canola	mitochondrion	11.29	35.29
CDX91316	Canola	cytosol	21.32	20.86
CDX97287	Canola	cytosol	21.0	20.55
CDX86957	Canola	cytosol	20.06	20.51
CDY00226	Canola	cytosol, nucleus, plastid	20.06	20.32
CDX67810	Canola	cytosol	18.5	16.43
CDX72090	Canola	mitochondrion	15.36	14.67
CDX84544	Canola	cytosol	13.48	14.33
CDY08856	Canola	cytosol	13.17	14.14
CDX79802	Canola	cytosol, golgi	18.18	13.98
CDY17912	Canola	cytosol, golgi	18.18	13.91
CDY36678	Canola	cytosol	16.93	13.88
CDX96351	Canola	cytosol	17.24	13.78
CDY27174	Canola	cytosol	6.58	13.73
CDX68298	Canola	cytosol	16.61	13.62
CDX72834	Canola	cytosol	16.93	13.57
CDY54233	Canola	golgi	7.52	12.9
CDY44171	Canola	cytosol	6.27	12.9
CDX98392	Canola	endoplasmic reticulum, extracellular	17.87	12.87
CDX70436	Canola	plastid	6.27	11.98
CDY34965	Canola	cytosol	15.36	10.43
CDY28352	Canola	cytosol	15.05	10.06
CDX90556	Canola	cytosol	15.05	9.98
CDY09730	Canola	cytosol	15.05	9.98
CDY05801	Canola	cytosol	15.67	9.96
CDX91118	Canola	nucleus	18.81	9.32
CDX85646	Canola	nucleus	18.81	9.27
CDX70506	Canola	nucleus	17.55	8.9
CDY05802	Canola	mitochondrion	15.67	8.7
CDX78524	Canola	nucleus	18.18	8.68
CDY34658	Canola	mitochondrion	18.5	7.7
CDY34846	Canola	nucleus	19.12	6.69
CDX88026	Canola	cytosol	17.24	6.63
CDX80363	Canola	cytosol	17.24	6.47
CDY60225	Canola	cytosol	16.93	6.47
CDX81101	Canola	cytosol	16.61	6.3
CDY52222	Canola	cytosol	19.12	5.44
CDY03812	Canola	cytosol	19.12	5.43
CDY15006	Canola	cytosol	16.3	5.13
CDY01533	Canola	plastid	0.94	1.9
CDY69403	Canola	nucleus	0.63	1.08
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.63	0.9

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	GO:A0A078IHG1	UniProt:A0A078IHG1	EnsemblPlants:CDY50395	ProteinID:CDY50395
ProteinID:CDY50395.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00096619001	InterPro:Gprotein_B	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19848	SMART:SM00320	SUPFAM:SSF50978	TMHMM:TMhelix	UniParc:UPI0004EDC15A
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaC09g28860DBnaC09g28860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHG1]

Coordinates

chrLK032906:+:871..3046

Molecular Weight (calculated)

36053.9 Da

IEP (calculated)

8.822

GRAVY (calculated)

-0.401

Length

319 amino acids

Sequence
(BLAST)

001: MKAMNSDRHV YVAWPWGIEA MRLSLHLAIS HGDQRGHKNW VLSIAWSPDG KHLVSGSKSG ELCCWNPKKG ELDGNPLTGQ KKWIPGISWE PSPPYGHTLA
101: VTCVKWGGDG IIYTGSQDCT IKMWETTQGR LILLYCVYFM FCFFCLLYGH GHWVNSPALS TENEERYNQA KGDSPERLVS GSDDFTMFLW EPSVSKQSKK
201: RLTGHQQLVN HVYFSPDGKW VASASFDRSV RLWNGVTGQF VTAFRRHVGP VYQVSWSADS RLLLSGSKDS TLKIWEIRTK TLKQDLPGHA DEFFAVDWSP
301: DGEKVVSGGK ERILKLWKG

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.