CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08668	Soybean	nucleus	96.88	96.88
Solyc03g112530.2.1	Tomato	nucleus	83.96	83.78
PGSC0003DMT400046634	Potato	cytosol	83.96	83.78
GSMUA_Achr3P29050_001	Banana	nucleus	82.71	83.05
CDX96156	Canola	cytosol	78.12	78.78
Bra022611.1-P	Field mustard	cytosol	77.92	78.57
CDX84790	Canola	cytosol	77.92	78.57
CDY27046	Canola	cytosol	77.92	78.57
AT5G52820.1	Thale cress	cytosol	76.67	77.8
TraesCS1A01G443600.1	Wheat	cytosol	75.83	76.63
TraesCS1B01G478100.1	Wheat	cytosol	75.62	76.26
TraesCS1D01G451700.1	Wheat	cytosol	75.42	76.21
EES18812	Sorghum	cytosol	75.42	75.57
Zm00001d039211_P006	Maize	cytosol	75.42	72.84
Bra003111.1-P	Field mustard	nucleus	35.0	72.41
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	47.92	72.1
CDY52843	Canola	nucleus	34.79	71.98
HORVU1Hr1G095080.1	Barley	cytosol, plastid	75.0	71.57
CDY09645	Canola	cytosol	66.46	67.44
VIT_13s0064g00330.t01	Wine grape	extracellular	15.83	58.02
KRH71413	Soybean	nucleus	21.04	31.56
KRH32024	Soybean	cytosol	20.62	31.03
KRH50874	Soybean	nucleus	21.25	31.0
KRH02239	Soybean	nucleus	21.25	30.82
KRH21524	Soybean	cytosol	11.88	25.33
KRH55267	Soybean	cytosol	7.29	24.65
KRG94875	Soybean	nucleus	17.71	24.64
KRH06660	Soybean	nucleus	17.71	24.64
KRH59511	Soybean	cytosol, nucleus	14.58	23.33
KRH35009	Soybean	cytosol	6.67	23.19
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	17.5	21.48
KRH43376	Soybean	nucleus	14.17	21.18
KRH37298	Soybean	cytosol	16.25	20.58
KRH35010	Soybean	nucleus	6.04	18.01
KRH12069	Soybean	nucleus	17.5	17.65
KRH37088	Soybean	nucleus	17.29	17.4
KRH57171	Soybean	cytosol	17.29	16.15
KRH03886	Soybean	nucleus	16.88	15.76
KRH13395	Soybean	nucleus	16.04	10.78
KRH20750	Soybean	nucleus	15.83	10.61
KRH56498	Soybean	cytosol	16.25	10.28
KRG93160	Soybean	cytosol	16.25	10.28
KRH20528	Soybean	cytosol	16.25	10.03
KRH10790	Soybean	cytosol	16.46	9.58
KRH49977	Soybean	cytosol	12.29	8.61
KRH21526	Soybean	cytosol, peroxisome	4.58	3.67
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.62	1.35

Protein Annotations

EntrezGene:100796328	MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	EMBL:ACUP02000762	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_02G080600
GO:GO:0000027	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005840	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:Gprotein_B	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K7K719	EnsemblPlants:KRH70275	ProteinID:KRH70275	ProteinID:KRH70275.1	ProteinID:KRH70276.1	InterPro:NLE
PFAM:PF00400	PFAM:PF08154	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19848	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233721E	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr2:+:6951574..6958099

Molecular Weight (calculated)

53486.0 Da

IEP (calculated)

8.111

GRAVY (calculated)

-0.319

Length

480 amino acids

Sequence
(BLAST)

001: MEDETETMVE KREIINNVMC LLTDPDGTPL GAPMYLPQNA GPQHLIQIVN KLLNNEEKLP YSFYISDEEL LVPLETYLLK NKASVEKALP IVCQPQAIFR
101: IRPVNRCTAT ISGHAEAVLS VAFSPDGRQL ASGSGDTAVR FWDLTTQTPL YTCTGHKNWV LSIAWSPDGK YLVSGSKTGE LICWDPQTGK SLGNPLIGHK
201: KWITGISWEP VHLNAPCRRF VSASKDGDAR IWDVSLKKCV MCLSGHTLAI TCVKWGGDGV IYTGSQDCTI KVWETTQGKL IRELRGHGHW VNSLALSTEY
301: VLRTGAFDHT GKQYSSPEEM KKVALERYQA MRGNAPERLV SGSDDFTMFL WEPFINKHPK TRMTGHQQLV NHVYFSPDGQ WVASASFDKS VKLWNGTTGK
401: FVTAFRGHVG PVYQISWSAD SRLLLSGSKD STLKVWDIRT RKLKQDLPGH ADEVFSVDWS PDGEKVASGG KDKVLKLWMG

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.