Factsheet for PGSC0003DMT400046634

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112530.2.1	Tomato	nucleus	99.79	99.79
VIT_13s0064g00360.t01	Wine grape	nucleus	86.49	87.21
KRH08668	Soybean	nucleus	84.2	84.38
GSMUA_Achr3P29050_001	Banana	nucleus	83.58	84.1
KRH70275	Soybean	nucleus	83.78	83.96
CDX96156	Canola	cytosol	78.59	79.41
AT5G52820.1	Thale cress	cytosol	77.55	78.86
CDY27046	Canola	cytosol	77.75	78.57
Bra022611.1-P	Field mustard	cytosol	77.75	78.57
CDX84790	Canola	cytosol	77.55	78.36
TraesCS1A01G443600.1	Wheat	cytosol	77.13	78.11
TraesCS1B01G478100.1	Wheat	cytosol	76.92	77.73
TraesCS1D01G451700.1	Wheat	cytosol	76.51	77.47
EES18812	Sorghum	cytosol	76.92	77.24
Zm00001d039211_P006	Maize	cytosol	76.92	74.45
HORVU1Hr1G095080.1	Barley	cytosol, plastid	76.3	72.96
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	48.02	72.41
Bra003111.1-P	Field mustard	nucleus	34.51	71.55
CDY52843	Canola	nucleus	34.3	71.12
CDY09645	Canola	cytosol	66.11	67.23
VIT_13s0064g00330.t01	Wine grape	extracellular	15.59	57.25
PGSC0003DMT400078695	Potato	cytosol	21.41	32.8
PGSC0003DMT400049837	Potato	cytosol, plastid	20.79	31.75
PGSC0003DMT400067694	Potato	cytosol	17.67	25.0
PGSC0003DMT400023040	Potato	mitochondrion	14.97	23.45
PGSC0003DMT400010145	Potato	cytosol	13.51	21.74
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	17.26	20.91
PGSC0003DMT400039207	Potato	cytosol	19.33	18.27
PGSC0003DMT400056446	Potato	cytosol	15.18	12.78
PGSC0003DMT400065114	Potato	cytosol	15.59	9.25
PGSC0003DMT400057760	Potato	cytosol	2.29	1.38
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.62	1.35
PGSC0003DMT400056447	Potato	extracellular	0.0	0.0

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	InterPro:Gprotein_B
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1BJD6	InterPro:NLE	PFAM:PF00400
PFAM:PF08154	EnsemblPlantsGene:PGSC0003DMG400018107	PGSC:PGSC0003DMG400018107	EnsemblPlants:PGSC0003DMT400046634	PRINTS:PR00319	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19848	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SUPFAM:SSF50998	UniParc:UPI0002957B71	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
SEG:seg	:	:	:	:	:

Description

Notchless [Source:PGSC_GENE;Acc:PGSC0003DMG400018107]

Coordinates

chr3:-:52314815..52324083

Molecular Weight (calculated)

53153.3 Da

IEP (calculated)

8.170

GRAVY (calculated)

-0.294

Length

481 amino acids

Sequence
(BLAST)

001: MEVEVEAAAA AEREATNSVI CQLADPEGNP LGAALYLPEN ASPKELNQVV NKLLSNEEKL PYAFYISDEE LVVQLGSYLE KNKVSVEKVL TIVYQPQAVF
101: RIRPVTRCSA TIAGHTEAVL SVAFSPDGRQ LASGSGDTTV RLWDLNTQTP LFTCQGHRNW VLSVAWSPDG KHLVSGSKAG ELICWDLQTG KPLGNPLTGH
201: KKWITGISWE PVHLSAPCRR FVSASKDGDA RIWDVTTRKC LICLTGHTLA ITCVKWGGDG VIYTGSQDCT IKVWETTQGK LIRELKGHGH WVNSLALSTE
301: YVLRSGAFDH THKHFASPEE MKKVALERYN KMRGNAPERL VSGSDDFTMF LWEPAVSKHP KTRMTGHQQL VNHVYFSPDG QWIASASFDK SVKLWNGTTG
401: KFVAAFRGHV GPVYQISWSA DSRLLLSGSK DSTLKVWDIR TKKLKQDLPG HADEVFAVDW SPDGEKVASG GKDRVLKLWM G

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.