CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70275	Soybean	nucleus	96.88	96.88
Solyc03g112530.2.1	Tomato	nucleus	84.38	84.2
PGSC0003DMT400046634	Potato	cytosol	84.38	84.2
GSMUA_Achr3P29050_001	Banana	nucleus	83.75	84.1
CDX96156	Canola	cytosol	77.29	77.94
Bra022611.1-P	Field mustard	cytosol	77.08	77.73
CDX84790	Canola	cytosol	77.08	77.73
CDY27046	Canola	cytosol	77.08	77.73
AT5G52820.1	Thale cress	cytosol	76.04	77.17
TraesCS1A01G443600.1	Wheat	cytosol	76.04	76.84
TraesCS1B01G478100.1	Wheat	cytosol	75.83	76.47
TraesCS1D01G451700.1	Wheat	cytosol	75.42	76.21
EES18812	Sorghum	cytosol	75.42	75.57
Zm00001d039211_P006	Maize	cytosol	75.62	73.04
Bra003111.1-P	Field mustard	nucleus	34.79	71.98
HORVU1Hr1G095080.1	Barley	cytosol, plastid	75.0	71.57
CDY52843	Canola	nucleus	34.58	71.55
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	47.29	71.16
CDY09645	Canola	cytosol	66.25	67.23
VIT_13s0064g00330.t01	Wine grape	extracellular	16.04	58.78
KRH71413	Soybean	nucleus	21.25	31.88
KRH32024	Soybean	cytosol	20.83	31.35
KRH50874	Soybean	nucleus	21.46	31.31
KRH02239	Soybean	nucleus	21.46	31.12
KRH21524	Soybean	cytosol	11.67	24.89
KRH55267	Soybean	cytosol	7.29	24.65
KRG94875	Soybean	nucleus	17.71	24.64
KRH06660	Soybean	nucleus	17.71	24.64
KRH35009	Soybean	cytosol	6.88	23.91
KRH59511	Soybean	cytosol, nucleus	14.79	23.67
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	18.12	22.25
KRH43376	Soybean	nucleus	14.38	21.5
KRH37298	Soybean	cytosol	16.88	21.37
KRH35010	Soybean	nucleus	6.46	19.25
KRH12069	Soybean	nucleus	18.12	18.28
KRH37088	Soybean	nucleus	17.92	18.03
KRH57171	Soybean	cytosol	17.29	16.15
KRH03886	Soybean	nucleus	16.88	15.76
KRH13395	Soybean	nucleus	15.83	10.64
KRH20750	Soybean	nucleus	15.62	10.47
KRH56498	Soybean	cytosol	16.04	10.14
KRG93160	Soybean	cytosol	16.04	10.14
KRH20528	Soybean	cytosol	16.25	10.03
KRH10790	Soybean	cytosol	16.25	9.45
KRH49977	Soybean	cytosol	12.71	8.91
KRH21526	Soybean	cytosol, peroxisome	4.58	3.67
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.62	1.35

Protein Annotations

EntrezGene:100799283	MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	EMBL:ACUP02010192	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_16G165100
GO:GO:0000027	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005840	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:Gprotein_B	UniProt:I1MP51	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH08668	ProteinID:KRH08668	ProteinID:KRH08668.1	InterPro:NLE	PFAM:PF00400
PFAM:PF08154	PRINTS:PR00319	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19848	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI000233C033	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:32435021..32442097

Molecular Weight (calculated)

53521.1 Da

IEP (calculated)

8.342

GRAVY (calculated)

-0.323

Length

480 amino acids

Sequence
(BLAST)

001: MEAETETMVE KREIINNVMC LLTDPDGTPF GAPMYLPQNA GPQHLNQIVN KLLNNEEKLP YAFYISNEEL LVPLETYLQK NKVSVEKALP IVCQPQAIFR
101: IRPVNRCTAT ISGHAEAVLS VAFSPDGQQL ASGSGDTTVR FWDLTTQTPL YTCTGHKNWV LCIAWSPDGK YLVSGSKTGE LICWDPQTGK SLGNPLIGHK
201: KWITGISWEP VHLNAPCRRF VSASKDGDAR IWDVSLKKCV MCLSGHTLAI TCVKWGGDGV IYTGSQDCTI KVWETTQGKL IRELKGHGHW VNSLALSTEY
301: VLRTGAFDHT GKKYSSPEEM KKVALERYQL MRGNAPERLV SGSDDFTMFL WEPFINKHPK TRMTGHQQLV NHVYFSPDGQ WVASASFDKS VKLWNGTTGK
401: FVAAFRGHVG PVYQISWSAD SRLLLSGSKD STLKVWDIRT RKLKQDLPGH SDEVFSVDWS PDGEKVASGG KDKVLKLWMG

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.