Factsheet for Bra003111.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52843	Canola	nucleus	99.57	99.57
Bra022611.1-P	Field mustard	cytosol	91.38	44.54
VIT_13s0064g00360.t01	Wine grape	nucleus	74.14	36.06
GSMUA_Achr3P29050_001	Banana	nucleus	74.14	35.98
KRH70275	Soybean	nucleus	72.41	35.0
KRH08668	Soybean	nucleus	71.98	34.79
Solyc03g112530.2.1	Tomato	nucleus	71.55	34.51
PGSC0003DMT400046634	Potato	cytosol	71.55	34.51
Bra009201.1-P	Field mustard	nucleus	70.69	34.17
Bra019610.1-P	Field mustard	plastid	21.12	15.46
Bra018529.1-P	Field mustard	cytosol	19.4	13.8
Bra003387.1-P	Field mustard	cytosol	18.1	12.5
Bra024323.1-P	Field mustard	cytosol	15.09	11.78
Bra004783.1-P	Field mustard	cytosol, golgi	18.1	10.12
Bra012753.1-P	Field mustard	cytosol	20.26	9.77
Bra016111.1-P	Field mustard	cytosol	16.38	9.52
Bra007287.1-P	Field mustard	cytosol	16.38	9.5
Bra021188.1-P	Field mustard	cytosol	19.4	9.05
Bra003910.1-P	Field mustard	cytosol	14.22	8.73
VIT_13s0064g00330.t01	Wine grape	extracellular	3.88	6.87
Bra006202.1-P	Field mustard	nucleus	18.1	6.34
Bra023416.1-P	Field mustard	nucleus	17.67	6.34
Bra037932.1-P	Field mustard	mitochondrion	15.52	6.26
Bra005990.1-P	Field mustard	cytosol	15.95	4.36
Bra009683.1-P	Field mustard	cytosol	15.52	3.97
Bra031445.1-P	Field mustard	cytosol	15.52	3.21
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra003111	EnsemblPlants:Bra003111.1	EnsemblPlants:Bra003111.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4CFX9	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19848	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254390A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

AT5G52820 (E=4e-098) | WD-40 repeat family protein / notchless protein, putative

Coordinates

chrA10:+:5059718..5061164

Molecular Weight (calculated)

25420.4 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.222

Length

232 amino acids

Sequence
(BLAST)

001: METASEAGMS NTVMCVLTDP EGTHLGSSMY IPQTAGPLQL TQLVNKFLNN QQQAVFRIRP VNRCSQTIAG HAEAVLCVSF SPDGKQLASV SGDTTVRLWD
101: LNTETPLFTC KGHKNWVLSI AWSPDGKHLV SGSKSGELCC WNPKKGELDG NPLTGRKKWI TGISWEPVHL SSPCRRFVTS SKDGDARIWD VTLKKSLICL
201: SGHTLAVTCV KWGGDGIIYT GCQMHSFNAY YR

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.