Factsheet for Bra009683.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88026	Canola	cytosol	88.96	97.23
CDX80363	Canola	cytosol	90.4	96.35
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	82.12	88.89
Bra005990.1-P	Field mustard	cytosol	67.66	72.29
GSMUA_Achr3P27210_001	Banana	golgi	32.89	63.0
KRG93160	Soybean	cytosol	51.99	62.06
VIT_10s0071g01150.t01	Wine grape	cytosol	54.41	61.86
KRH56498	Soybean	cytosol	51.77	61.79
Solyc02g021360.2.1	Tomato	cytosol	52.21	59.27
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	48.01	54.85
PGSC0003DMT400065114	Potato	cytosol	48.57	54.25
Solyc04g008720.2.1	Tomato	cytosol	48.45	54.2
KXG27434	Sorghum	cytosol	47.13	46.41
TraesCS2B01G591600.2	Wheat	cytosol	46.8	46.24
TraesCS2D01G561900.1	Wheat	cytosol	47.13	46.16
Zm00001d026621_P006	Maize	cytosol	46.36	46.15
TraesCS2A01G592600.1	Wheat	cytosol	47.02	46.05
Zm00001d001828_P033	Maize	cytosol	46.69	45.88
Os04t0677700-00	Rice	cytosol	42.83	43.6
GSMUA_Achr9P23740_001	Banana	golgi	48.34	41.79
Bra031445.1-P	Field mustard	cytosol	36.31	29.32
Bra019610.1-P	Field mustard	plastid	8.61	24.61
Bra003387.1-P	Field mustard	cytosol	8.17	22.02
Bra018529.1-P	Field mustard	cytosol	7.51	20.86
Bra004783.1-P	Field mustard	cytosol, golgi	8.61	18.8
Bra003910.1-P	Field mustard	cytosol	7.4	17.72
Bra016111.1-P	Field mustard	cytosol	7.51	17.04
Bra024323.1-P	Field mustard	cytosol	5.52	16.84
Bra022611.1-P	Field mustard	cytosol	8.39	15.97
Bra003111.1-P	Field mustard	nucleus	3.97	15.52
Bra012753.1-P	Field mustard	cytosol	7.95	14.97
Bra007287.1-P	Field mustard	cytosol	6.51	14.75
Bra009201.1-P	Field mustard	nucleus	7.51	14.17
Bra023416.1-P	Field mustard	nucleus	10.04	14.06
Bra006202.1-P	Field mustard	nucleus	9.82	13.44
Bra021188.1-P	Field mustard	cytosol	7.28	13.28
Bra037932.1-P	Field mustard	mitochondrion	7.95	12.52

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra009683	EnsemblPlants:Bra009683.1	EnsemblPlants:Bra009683.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008352
GO:GO:0009987	GO:GO:0016043	GO:GO:0051013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1	UniProt:M4CZN6	HAMAP:MF_03022	PFAM:PF00400	PFAM:PF13925
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF5
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253F093	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT5G23430 (E=0.0) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA06:-:16524433..16530134

Molecular Weight (calculated)

99320.5 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.411

Length

906 amino acids

Sequence
(BLAST)

001: MSPTTLQGLH DFYQASLQAT YPFLSEFVAH SAAVNCLKIG RKSSRVLVTG GEDHKVNLWA IGKPNAILSL YGHSSGIDSV TFDASEVLVA AGAASGTIKL
101: WDLEEAKLVR TLTGHRSNCI SVDFHPFGEF FASGSLDTNL KIWDLRKKGP IHTYKGHTRG VNVLRFTPDG RWVVSGGEDN IVKVWDLTAG KLLTEFKCHE
201: GQIQSLDFHP HEFLLATGSA DRTVKFWDLE TFELIGSGGP ETSGVRCLSF NPDGKTVLCG LQESLKIFSW EPIRCHDGVD VGWSRLSDMN VHEGKLLGCS
301: YNQNCVGVWV VDLSRTEPCN TGDAAQSNGQ AEKKSGSGRD SVVLNDNNSK TTIPGKLSVS QNVDPLLKET KSLGRLSVTQ NSDPSTKETK AVGRSSTSHS
401: SDSKPLGRLS VSQNSDVAKE SRTLSSTGSV PSTPHRVSVT SVSKAAVSNA ATSRRNFTKA NQKSHPVNKA ADFIQVFVPR EDPRVEQATE SRAELDIIAR
501: TMPYSLQAAD SRRSPPSSKN NQDLPNAPVL EMSESQPVEP SNIPDKSTFP GGKGGMRGAA ERSINDFRYK RYGRSNSRSR MGSPPRNHDE NYDLVSHKSS
601: REPSPTESRK GGRFQSLFIN RERRGRFSNY EGPVSNFPGG GNAAAPNIHP SNMFKQRGNN MPVEQGIESP SEDNIVEDIM GKHDQFVSSM QSRLAKLQVV
701: RRYWERNDVK NTIGSMEKMA DNAVTADVLS IITERNEIMT LDTCTSLLPI LAALLASDMD QHLSVSLDML LKLVRMYGSP IYLSLSAPAS VGVDIEAEQR
801: IERYSRCFVE LEKVKACLPS LSRHLSVSLD MLLKLVRMYG SPIYLSLSAP ASVGVDIEAE QRIERYSRCF VELEKVKACL PSLSRRGGLV AKSVLELNLA
901: FQEISS

Best Arabidopsis Sequence Match ( AT5G23430.1 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.