Factsheet for Bra009201.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70097	Canola	cytosol	95.42	99.13
Bra022611.1-P	Field mustard	cytosol	74.58	75.21
Bra003111.1-P	Field mustard	nucleus	34.17	70.69
TraesCS1A01G443600.1	Wheat	cytosol	64.38	65.05
TraesCS1B01G478100.1	Wheat	cytosol	64.17	64.71
TraesCS1D01G451700.1	Wheat	cytosol	63.96	64.63
EES18812	Sorghum	cytosol	63.12	63.26
Os10t0104500-01	Rice	cytosol	63.12	63.12
Os11t0594200-01	Rice	cytosol	62.71	62.71
HORVU1Hr1G095080.1	Barley	cytosol, plastid	64.38	61.43
Zm00001d039211_P006	Maize	cytosol	63.54	61.37
Bra019610.1-P	Field mustard	plastid	20.21	30.6
Bra018529.1-P	Field mustard	cytosol	19.38	28.53
Bra024323.1-P	Field mustard	cytosol	14.38	23.23
Bra003387.1-P	Field mustard	cytosol	15.83	22.62
Bra003910.1-P	Field mustard	cytosol	15.0	19.05
Bra016111.1-P	Field mustard	cytosol	15.42	18.55
Bra004783.1-P	Field mustard	cytosol, golgi	15.83	18.31
Bra007287.1-P	Field mustard	cytosol	13.75	16.5
Bra012753.1-P	Field mustard	cytosol	15.83	15.8
Bra021188.1-P	Field mustard	cytosol	15.42	14.89
Bra037932.1-P	Field mustard	mitochondrion	16.67	13.91
Bra023416.1-P	Field mustard	nucleus	17.5	12.98
Bra006202.1-P	Field mustard	nucleus	17.08	12.39
Bra005990.1-P	Field mustard	cytosol	14.38	8.14
Bra009683.1-P	Field mustard	cytosol	14.17	7.51
Bra031445.1-P	Field mustard	cytosol	15.62	6.68

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra009201	EnsemblPlants:Bra009201.1	EnsemblPlants:Bra009201.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	InterPro:Gprotein_B	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4CYA4	InterPro:NLE	PFAM:PF00400	PFAM:PF08154	PRINTS:PR00319	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19848	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002544FFC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

AT5G52820 (E=6e-204) | WD-40 repeat family protein / notchless protein, putative

Coordinates

chrA10:-:15618232..15620680

Molecular Weight (calculated)

53611.0 Da

IEP (calculated)

7.859

GRAVY (calculated)

-0.293

Length

480 amino acids

Sequence
(BLAST)

001: MAMNTVMCLL TDAEGTPLGS AMYIPHNAGH LQLINLVNTF LNNEEKLSYS FYVSDEELLV SVGTYMERNS VSVENVLKIV YRQQAVFRIR PVYRCSQTIS
101: DVHEGEILCV SFSPDGKQLA SGSGDKTVRL WDLNTETPMF TCKGHKEHVL AVAWSPDAKC LVSGDRDGKV CCWDPSKGEL LGNALSGHKK WICGIAWEPA
201: HLSYPSRRFV TCGKDGDARI WDFTLKRTLI VLSGHTRAVT CVKWGGDGTI YTGSQDSTIR MWEITQQGQG ILKHILRDHA GWVNSLSLST EYVLRTGAFD
301: HTRQVTCSDE EMKKIALERY IKAKGKVDSP ERLVSGSDDF TIILWEPSVS LQPKQKMVTT ARVTGHQQLV NHVYFSPNGQ WIASASFDKS VKLWDGVTGK
401: FITAFRGHAN CVYQISWSPD SRMLLSCSKD STLKVWDIGT KKLKHDLPGH KDEVWAVDWS PDGEKVASGG LDKDLKLWKG

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.