Factsheet for Bra004783.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79802	Canola	cytosol, golgi	99.52	99.52
CDY17912	Canola	cytosol, golgi	98.8	98.32
AT2G43770.1	Thale cress	cytosol	75.42	91.25
Bra003387.1-P	Field mustard	cytosol	71.33	88.1
VIT_05s0094g00800.t01	Wine grape	cytosol	68.43	82.56
Solyc03g059100.1.1	Tomato	nucleus	64.34	81.9
KRG94875	Soybean	nucleus	67.47	81.16
KRH06660	Soybean	nucleus	67.47	81.16
PGSC0003DMT400067694	Potato	cytosol	66.02	80.59
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	62.41	79.45
Zm00001d036709_P001	Maize	cytosol	61.69	78.53
GSMUA_Achr3P04370_001	Banana	cytosol	60.0	77.33
EER90141	Sorghum	plastid	63.61	76.97
Os06t0653800-01	Rice	nucleus	63.13	76.38
TraesCS7B01G406900.1	Wheat	cytosol, plastid	63.37	76.01
TraesCS7A01G499900.1	Wheat	nucleus	63.13	75.72
HORVU7Hr1G111780.2	Barley	cytosol, plastid	62.89	75.43
TraesCS7D01G486800.1	Wheat	cytosol, plastid	62.89	75.43
Bra019610.1-P	Field mustard	plastid	22.17	29.02
Bra018529.1-P	Field mustard	cytosol	21.45	27.3
Bra024323.1-P	Field mustard	cytosol	19.28	26.94
Bra003111.1-P	Field mustard	nucleus	10.12	18.1
Bra022611.1-P	Field mustard	cytosol	20.0	17.44
Bra016111.1-P	Field mustard	cytosol	16.14	16.79
Bra003910.1-P	Field mustard	cytosol	14.46	15.87
Bra009201.1-P	Field mustard	nucleus	18.31	15.83
Bra007287.1-P	Field mustard	cytosol	13.49	14.0
Bra012753.1-P	Field mustard	cytosol	15.9	13.72
Bra037932.1-P	Field mustard	mitochondrion	18.8	13.57
Bra021188.1-P	Field mustard	cytosol	15.42	12.88
Bra023416.1-P	Field mustard	nucleus	16.63	10.66
Bra006202.1-P	Field mustard	nucleus	16.63	10.42
Bra009683.1-P	Field mustard	cytosol	18.8	8.61
Bra005990.1-P	Field mustard	cytosol	17.35	8.49
Bra031445.1-P	Field mustard	cytosol	17.83	6.6

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlantsGene:Bra004783	EnsemblPlants:Bra004783.1	EnsemblPlants:Bra004783.1-P
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M4CKP8	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002547B78
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

AT2G43770 (E=1e-182) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA05:-:1811154..1813258

Molecular Weight (calculated)

45675.4 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.364

Length

415 amino acids

Sequence
(BLAST)

001: MSGFPGLSFL GPKSKNAVVA GGLTAFVFGV YFYTMKAVGG TDELQMAIDK FEDQKQVETD PKGSGNDVER FLPFSPSSDL EMEIMPRENE NALSAPTPME
101: LGPGPYGKQR TSSLEAPIML LTGHPSAVYT MKFNPSGTLI ASGSHDREIF LWRVHGDCKN FMVLKGHKNA ILDLHWTSDG SMIVSASPDK TVRAWDVETG
201: KQVKKMAEHS SFVNSCCPTR RGLPLIISGS DDGTAKLWDL RQRGAIQTFP DKYQITAVSF SDAADKIFTG GVDNDVKVWD LRKGEATMTL EGHQDTITGM
301: SLSPDGSYLL TNGMDNKLCV WDMRPYAPQN RCVKVFEGHQ HNFEKNLLKC SWSPDGTKVT AGSADRMVHI WDTTTRRILY KLPGHKGSVN ECVFHPSEPI
401: IGSCSSDKDI YLGEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.