CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06660	Soybean	nucleus	98.84	98.84
VIT_05s0094g00800.t01	Wine grape	cytosol	89.57	89.83
Bra003387.1-P	Field mustard	cytosol	84.06	86.31
Solyc03g059100.1.1	Tomato	nucleus	81.45	86.2
PGSC0003DMT400067694	Potato	cytosol	84.93	86.18
AT2G43770.1	Thale cress	cytosol	84.93	85.42
GSMUA_Achr3P04370_001	Banana	cytosol	77.1	82.61
CDX67810	Canola	cytosol	84.35	81.06
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	75.65	80.06
Zm00001d036709_P001	Maize	cytosol	75.07	79.45
EER90141	Sorghum	plastid	78.26	78.72
Os06t0653800-01	Rice	nucleus	77.1	77.55
TraesCS7B01G406900.1	Wheat	cytosol, plastid	75.94	75.72
HORVU7Hr1G111780.2	Barley	cytosol, plastid	75.65	75.43
TraesCS7A01G499900.1	Wheat	nucleus	75.65	75.43
TraesCS7D01G486800.1	Wheat	cytosol, plastid	75.36	75.14
Bra004783.1-P	Field mustard	cytosol, golgi	81.16	67.47
CDX79802	Canola	cytosol, golgi	81.16	67.47
CDY17912	Canola	cytosol, golgi	81.16	67.15
CDX98392	Canola	endoplasmic reticulum, extracellular	83.77	65.24
KRH50874	Soybean	nucleus	26.09	27.36
KRH02239	Soybean	nucleus	25.8	26.89
KRH71413	Soybean	nucleus	24.93	26.88
KRH59511	Soybean	cytosol, nucleus	23.19	26.67
KRH32024	Soybean	cytosol	24.64	26.65
KRH43376	Soybean	nucleus	23.19	24.92
KRH35009	Soybean	cytosol	9.86	24.64
KRH21524	Soybean	cytosol	15.65	24.0
KRH55267	Soybean	cytosol	8.41	20.42
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	22.61	19.95
KRH70275	Soybean	nucleus	24.64	17.71
KRH08668	Soybean	nucleus	24.64	17.71
KRH37298	Soybean	cytosol	19.13	17.41
KRH57171	Soybean	cytosol	24.06	16.15
KRH03886	Soybean	nucleus	24.06	16.15
KRH12069	Soybean	nucleus	19.13	13.87
KRH37088	Soybean	nucleus	19.13	13.84
KRH35010	Soybean	nucleus	6.38	13.66
KRH20750	Soybean	nucleus	20.58	9.92
KRG93160	Soybean	cytosol	21.74	9.88
KRH13395	Soybean	nucleus	20.29	9.8
KRH56498	Soybean	cytosol	21.45	9.75
KRH20528	Soybean	cytosol	20.58	9.13
KRH10790	Soybean	cytosol	20.29	8.48
KRH49977	Soybean	cytosol	15.65	7.88
KRH21526	Soybean	cytosol, peroxisome	4.93	2.84

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	EMBL:ACUP02012051	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_19G114900	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1N8B6	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EnsemblPlants:KRG94875	ProteinID:KRG94875	ProteinID:KRG94875.1	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233E30A
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

hypothetical protein

Coordinates

chr19:+:36994520..36997947

Molecular Weight (calculated)

38198.5 Da

IEP (calculated)

7.282

GRAVY (calculated)

-0.416

Length

345 amino acids

Sequence
(BLAST)

001: MQVFPSEGES ALSVVGPRPM EWSTVPYNAP QAPGPNGKQR TSSLESPIML LSGHQSAIYT MKFNPAGSVV ASGSHDREIF LWNVHGDCKN FMVLKGHKNA
101: VLDLHWTTDG TQIVSASPDK TVRAWDVETG KQIKKMVEHL SYVNSCCPSR RGPPLVVSGS DDGTAKLWDM RQRGSIQTFP DKYQITAVGF SDASDKIFTG
201: GIDNDVKIWD LRKGEVTMTL QGHQDMITAM QLSPDGSYLL TNGMDCKLCI WDMRPYAPQN RCVKVLEGHQ HNFEKNLLKC GWSPDGSKVT AGSSDRMVYI
301: WDTTSRRILY KLPGHNGSVN ECVFHPNEPI IGSCSSDKQI YLGEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.