CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43376	Soybean	nucleus	97.33	90.97
VIT_09s0002g01580.t01	Wine grape	cytosol	86.67	86.96
GSMUA_Achr6P13100_001	Banana	cytosol	85.0	83.88
Solyc11g005550.1.1	Tomato	cytosol	82.33	82.61
PGSC0003DMT400010145	Potato	cytosol	81.67	81.94
Bra024323.1-P	Field mustard	cytosol	80.67	81.48
CDY08856	Canola	cytosol	80.67	81.48
CDX84544	Canola	cytosol	81.33	81.33
AT5G64730.1	Thale cress	cytosol	80.33	80.6
EES05216	Sorghum	cytosol	74.0	73.27
Zm00001d050708_P002	Maize	cytosol	73.33	72.61
Os02t0543400-01	Rice	cytosol, mitochondrion	72.33	72.09
TraesCS6B01G275200.2	Wheat	cytosol	71.0	71.0
TraesCS6D01G232000.1	Wheat	cytosol	70.67	70.67
TraesCS6A01G250200.1	Wheat	cytosol	70.67	70.67
HORVU6Hr1G063000.1	Barley	cytosol	71.33	67.3
HORVU0Hr1G027010.1	Barley	plastid	71.33	59.61
KRH50874	Soybean	nucleus	30.33	27.66
KRH32024	Soybean	cytosol	29.0	27.27
KRH02239	Soybean	nucleus	30.0	27.19
KRH71413	Soybean	nucleus	29.0	27.19
KRG94875	Soybean	nucleus	26.67	23.19
KRH06660	Soybean	nucleus	26.33	22.9
KRH35009	Soybean	cytosol	9.33	20.29
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	23.0	17.65
KRH55267	Soybean	cytosol	8.0	16.9
KRH21524	Soybean	cytosol	12.0	16.0
KRH03886	Soybean	nucleus	26.33	15.37
KRH57171	Soybean	cytosol	26.33	15.37
KRH08668	Soybean	nucleus	23.67	14.79
KRH70275	Soybean	nucleus	23.33	14.58
KRH37298	Soybean	cytosol	18.33	14.51
KRH12069	Soybean	nucleus	21.33	13.45
KRH37088	Soybean	nucleus	21.0	13.21
KRH35010	Soybean	nucleus	5.0	9.32
KRH13395	Soybean	nucleus	20.33	8.54
KRH20750	Soybean	nucleus	20.33	8.52
KRH20528	Soybean	cytosol	18.67	7.2
KRH56498	Soybean	cytosol	17.33	6.85
KRG93160	Soybean	cytosol	17.33	6.85
KRH10790	Soybean	cytosol	18.0	6.55
KRH49977	Soybean	cytosol	13.0	5.69
KRH21526	Soybean	cytosol, peroxisome	6.0	3.01

Protein Annotations

EntrezGene:100775310	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02003327	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_05G187400
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1K4U8	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH59511	ProteinID:KRH59511	ProteinID:KRH59511.1	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000233A0F7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

hypothetical protein

Coordinates

chr5:-:37372521..37376038

Molecular Weight (calculated)

33230.1 Da

IEP (calculated)

7.257

GRAVY (calculated)

-0.334

Length

300 amino acids

Sequence
(BLAST)

001: MSVKNDVPGK EVNVLKGHEG GVLAARFNTD GNYVLSCGKD RTIRLWNPHR GIHIKTYKSH AREVRDVHVT QDNSKLCSCG GDRQIFYWDV ATGRVIRKFR
101: GHDGEVNGVK FNEYSSVVVS AGYDQSLRAW DCRSHSTEPI QIIDTFADSV MSVCLTKTEI IGGSVDGTVR TFDIRIGREI SDNLGQSVNC VSMSNDGNCI
201: LAGCLDSTLR LLDRSTGELL QEYKGHTNKS YKLDCCLTNT DAHVTGGSED GFIYFWDLVD ASVVSRFRAH TSVVTSVSYH PKENCMVTSS VDGTIRVWKT

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.