CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024323.1-P	Field mustard	cytosol	98.33	99.33
CDY08856	Canola	cytosol	98.33	99.33
AT5G64730.1	Thale cress	cytosol	95.67	95.99
KRH59511	Soybean	cytosol, nucleus	81.33	81.33
PGSC0003DMT400010145	Potato	cytosol	81.0	81.27
Solyc11g005550.1.1	Tomato	cytosol	81.0	81.27
VIT_09s0002g01580.t01	Wine grape	cytosol	80.33	80.6
GSMUA_Achr6P13100_001	Banana	cytosol	81.0	79.93
KRH43376	Soybean	nucleus	81.67	76.32
Os02t0543400-01	Rice	cytosol, mitochondrion	72.67	72.43
TraesCS6B01G275200.2	Wheat	cytosol	71.0	71.0
TraesCS6A01G250200.1	Wheat	cytosol	70.67	70.67
TraesCS6D01G232000.1	Wheat	cytosol	70.67	70.67
EES05216	Sorghum	cytosol	71.0	70.3
Zm00001d050708_P002	Maize	cytosol	70.67	69.97
HORVU6Hr1G063000.1	Barley	cytosol	70.67	66.67
HORVU0Hr1G027010.1	Barley	plastid	70.67	59.05
CDX91316	Canola	cytosol	29.0	26.69
CDX97287	Canola	cytosol	28.33	26.07
CDX86957	Canola	cytosol	26.67	25.64
CDY00226	Canola	cytosol, nucleus, plastid	26.67	25.4
CDX70436	Canola	plastid	13.0	23.35
CDX67810	Canola	cytosol	26.33	22.01
CDX72090	Canola	mitochondrion	22.0	19.76
CDX79802	Canola	cytosol, golgi	26.67	19.28
CDY17912	Canola	cytosol, golgi	26.67	19.18
CDX98392	Canola	endoplasmic reticulum, extracellular	26.33	17.83
CDY52843	Canola	nucleus	12.0	15.52
CDX72834	Canola	cytosol	20.33	15.33
CDX96351	Canola	cytosol	20.33	15.29
CDY54233	Canola	golgi	9.33	15.05
CDY36678	Canola	cytosol	19.33	14.91
CDY08014	Canola	mitochondrion	5.0	14.71
CDX68298	Canola	cytosol	19.0	14.65
CDY34965	Canola	cytosol	22.33	14.26
CDX98931	Canola	nucleus	22.67	14.17
CDX77842	Canola	cytosol, nucleus, peroxisome	4.67	14.14
CDY28352	Canola	cytosol	22.33	14.05
CDX90556	Canola	cytosol	22.33	13.93
CDY09730	Canola	cytosol	22.33	13.93
CDX70097	Canola	cytosol	21.33	13.85
CDY05801	Canola	cytosol	23.0	13.74
CDY09645	Canola	cytosol	21.67	13.74
CDX84790	Canola	cytosol	21.67	13.66
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	14.33	13.48
CDY27046	Canola	cytosol	21.33	13.45
CDX96156	Canola	cytosol	21.33	13.45
CDY05802	Canola	mitochondrion	23.0	12.0
CDY27174	Canola	cytosol	5.33	10.46
CDX91118	Canola	nucleus	21.0	9.78
CDX85646	Canola	nucleus	20.67	9.58
CDX70506	Canola	nucleus	20.0	9.54
CDX78524	Canola	nucleus	20.33	9.13
CDY44171	Canola	cytosol	4.67	9.03
CDY34658	Canola	mitochondrion	19.0	7.44
CDY60225	Canola	cytosol	17.33	6.23
CDY34846	Canola	nucleus	18.67	6.14
CDX81101	Canola	cytosol	17.0	6.06
CDX88026	Canola	cytosol	16.67	6.03
CDX80363	Canola	cytosol	17.0	6.0
CDY52222	Canola	cytosol	18.33	4.9
CDY03812	Canola	cytosol	18.0	4.81
CDY15006	Canola	cytosol	16.0	4.73
CDY01533	Canola	plastid	2.33	4.43
CDY69403	Canola	nucleus	0.33	0.54

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX84544	ProteinID:CDX84544	ProteinID:CDX84544.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00141789001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22847	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EBC5BB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC03g49560D

Coordinates

chrLK031837:+:1808631..1810544

Molecular Weight (calculated)

33135.4 Da

IEP (calculated)

7.478

GRAVY (calculated)

-0.225

Length

300 amino acids

Sequence
(BLAST)

001: MSATTELPTK EANLLKGHEG AVLAARFNGD GNYALTCGKD RTIRLWNPHR GILIKTYKSH GREVRDVHVT SDNAKFCSCG GDRQVYYWDV STGRVIRKFR
101: GHDGEVNAVK FNDSSAVVVS AGFDRSLRVW DCRSHSVEPV QIIDTFLDTV MSVVLTKTEI IGGSVDGTVR TFDIRMGREM SDNLGQPVNC ISISNDGNCV
201: LAGCLDSTLR LLDRTTGELL QVYKGHISKS FKTDCCLTNS DAHVIGGSED GMVYFWDLVD AKVVSKFRAH DLVVTSVSYH PKEDCMLTSS VDGTVRVWKK

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.