CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050708_P002	Maize	cytosol	98.35	98.35
Os02t0543400-01	Rice	cytosol, mitochondrion	88.45	89.04
TraesCS6B01G275200.2	Wheat	cytosol	87.13	88.0
TraesCS6D01G232000.1	Wheat	cytosol	86.8	87.67
TraesCS6A01G250200.1	Wheat	cytosol	86.8	87.67
HORVU6Hr1G063000.1	Barley	cytosol	87.46	83.33
GSMUA_Achr6P13100_001	Banana	cytosol	76.57	76.32
VIT_09s0002g01580.t01	Wine grape	cytosol	74.26	75.25
KRH59511	Soybean	cytosol, nucleus	73.27	74.0
HORVU0Hr1G027010.1	Barley	plastid	87.46	73.82
Solyc11g005550.1.1	Tomato	cytosol	71.29	72.24
PGSC0003DMT400010145	Potato	cytosol	70.96	71.91
Bra024323.1-P	Field mustard	cytosol	69.97	71.38
CDY08856	Canola	cytosol	69.97	71.38
CDX84544	Canola	cytosol	70.3	71.0
AT5G64730.1	Thale cress	cytosol	69.31	70.23
KRH43376	Soybean	nucleus	73.6	69.47
OQU91075	Sorghum	cytosol	28.05	26.65
KXG36525	Sorghum	plastid	25.41	23.4
EER90141	Sorghum	plastid	22.11	19.53
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	20.13	15.33
EES18812	Sorghum	cytosol	22.77	14.4
KXG25821	Sorghum	cytosol	21.12	13.36
KXG37566	Sorghum	plastid	24.75	13.04
EES04226	Sorghum	nucleus	22.44	9.52
OQU91573	Sorghum	plastid	18.48	6.41
OQU87670	Sorghum	cytosol	17.49	6.37
KXG27434	Sorghum	cytosol	18.15	5.98

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:8064246	UniProt:C5XU47	EnsemblPlants:EES05216	ProteinID:EES05216
ProteinID:EES05216.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847
SMART:SM00320	EnsemblPlantsGene:SORBI_3004G171200	SUPFAM:SSF50978	unigene:Sbi.5319	UniParc:UPI0001A8576D	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002452240.1	:

Description

hypothetical protein

Coordinates

chr4:+:52371178..52375024

Molecular Weight (calculated)

33372.1 Da

IEP (calculated)

7.478

GRAVY (calculated)

-0.308

Length

303 amino acids

Sequence
(BLAST)

001: MTSSGTGAQQ LPRTEARSLS GHEGAVLAVR FNRDGNYCLS CGKDRTLRLW NPHTGAHVKT YKSHAREVRD VHSSSDNAKL VSCGADRQIF YWDVASGRVI
101: RKFRGHNSEV NSVKFNEYNA VVVSAGYDRT VRAFDCRSQS SDPIQTIDTF QDSVMSVNLT KTEIIAGSVD GTVRAFDIRM GRETVDNLGH PVNCVSLSND
201: SNCLLANCLD STVRLLDKSS GELLQEYKGH TCKSFKMDSC LTNDDAFVVG GSEDGYIFFW ELVDAPVVAR FRAHSSVVTS ISYHPTKACM LTSSVDGSIR
301: VWT

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.