Factsheet for Bra024323.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08856	Canola	cytosol	100.0	100.0
CDX84544	Canola	cytosol	99.33	98.33
AT5G64730.1	Thale cress	cytosol	96.3	95.65
KRH59511	Soybean	cytosol, nucleus	81.48	80.67
Solyc11g005550.1.1	Tomato	cytosol	81.14	80.6
PGSC0003DMT400010145	Potato	cytosol	81.14	80.6
VIT_09s0002g01580.t01	Wine grape	cytosol	80.81	80.27
GSMUA_Achr6P13100_001	Banana	cytosol	81.48	79.61
KRH43376	Soybean	nucleus	81.82	75.7
Os02t0543400-01	Rice	cytosol, mitochondrion	73.06	72.09
TraesCS6B01G275200.2	Wheat	cytosol	71.38	70.67
TraesCS6D01G232000.1	Wheat	cytosol	71.04	70.33
TraesCS6A01G250200.1	Wheat	cytosol	71.04	70.33
EES05216	Sorghum	cytosol	71.38	69.97
Zm00001d050708_P002	Maize	cytosol	71.04	69.64
HORVU6Hr1G063000.1	Barley	cytosol	71.04	66.35
HORVU0Hr1G027010.1	Barley	plastid	71.04	58.77
Bra018529.1-P	Field mustard	cytosol	28.96	26.38
Bra019610.1-P	Field mustard	plastid	26.94	25.24
Bra003387.1-P	Field mustard	cytosol	26.26	23.21
Bra004783.1-P	Field mustard	cytosol, golgi	26.94	19.28
Bra016111.1-P	Field mustard	cytosol	20.88	15.54
Bra007287.1-P	Field mustard	cytosol	20.54	15.25
Bra003111.1-P	Field mustard	nucleus	11.78	15.09
Bra009201.1-P	Field mustard	nucleus	23.23	14.38
Bra003910.1-P	Field mustard	cytosol	18.18	14.29
Bra012753.1-P	Field mustard	cytosol	22.22	13.72
Bra021188.1-P	Field mustard	cytosol	22.56	13.48
Bra022611.1-P	Field mustard	cytosol	21.21	13.24
Bra037932.1-P	Field mustard	mitochondrion	22.9	11.83
Bra023416.1-P	Field mustard	nucleus	20.54	9.43
Bra006202.1-P	Field mustard	nucleus	20.2	9.06
Bra005990.1-P	Field mustard	cytosol	17.17	6.01
Bra009683.1-P	Field mustard	cytosol	16.84	5.52
Bra031445.1-P	Field mustard	cytosol	17.85	4.72

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlantsGene:Bra024323	EnsemblPlants:Bra024323.1	EnsemblPlants:Bra024323.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4E6B9	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22847	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253F479	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT5G64730 (E=4e-164) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA06:+:14953394..14955048

Molecular Weight (calculated)

32862.1 Da

IEP (calculated)

7.478

GRAVY (calculated)

-0.229

Length

297 amino acids

Sequence
(BLAST)

001: MTELPTKEAN LLKGHEGAVL AARFNGDGNY ALTCGKDRTI RLWNPHRGIL IKTYKSHGRE VRDVHVTSDN AKFCSCGGDR QVYYWDVSTG RVIRKFRGHD
101: GEVNAVKFND SSAVVVSAGF DRSLRVWDCR SHSVEPVQII DTFLDTVMSV VLTKTEIIGG SVDGTVRTFD IRMGREMSDN LGQPVNCISV SNDGNCVLAG
201: CLDSTLRLLD RTTGELLQVY KGHISKSFKT DCCLTNSDAH VIGGSEDGMV YFWDLVDAKV VSKFRAHDLV VTSVSYHPKE DCMLTSSVDG TVRVWKK

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.