Factsheet for Bra006202.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78524	Canola	nucleus	98.64	97.75
CDX70506	Canola	nucleus	91.84	96.66
Bra023416.1-P	Field mustard	nucleus	90.48	92.58
AT5G13480.2	Thale cress	nucleus	84.74	85.39
KRH13395	Soybean	nucleus	69.94	64.85
KRH20750	Soybean	nucleus	69.18	63.97
VIT_13s0019g00220.t01	Wine grape	nucleus	73.11	62.61
GSMUA_Achr4P29380_001	Banana	nucleus	66.01	61.46
EES04226	Sorghum	nucleus	65.26	60.5
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	65.41	60.31
Solyc08g067040.2.1	Tomato	nucleus	69.03	59.82
TraesCS5A01G293600.2	Wheat	nucleus	63.75	59.35
TraesCS5B01G292800.1	Wheat	nucleus	63.75	59.19
TraesCS5D01G300900.1	Wheat	nucleus	63.75	59.19
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	64.65	56.84
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	18.28	42.76
Bra018529.1-P	Field mustard	cytosol	11.78	23.93
Bra019610.1-P	Field mustard	plastid	11.18	23.34
Bra003387.1-P	Field mustard	cytosol	11.18	22.02
Bra024323.1-P	Field mustard	cytosol	9.06	20.2
Bra003111.1-P	Field mustard	nucleus	6.34	18.1
Bra009201.1-P	Field mustard	nucleus	12.39	17.08
Bra003910.1-P	Field mustard	cytosol	9.67	16.93
Bra004783.1-P	Field mustard	cytosol, golgi	10.42	16.63
Bra022611.1-P	Field mustard	cytosol	11.93	16.6
Bra016111.1-P	Field mustard	cytosol	9.97	16.54
Bra007287.1-P	Field mustard	cytosol	9.82	16.25
Bra012753.1-P	Field mustard	cytosol	11.33	15.59
Bra021188.1-P	Field mustard	cytosol	10.88	14.49
Bra037932.1-P	Field mustard	mitochondrion	11.03	12.7
Bra005990.1-P	Field mustard	cytosol	13.9	10.85
Bra009683.1-P	Field mustard	cytosol	13.44	9.82
Bra031445.1-P	Field mustard	cytosol	12.69	7.49

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlantsGene:Bra006202	EnsemblPlants:Bra006202.1	EnsemblPlants:Bra006202.1-P
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M4CPR3	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253FABA
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

AT5G13480 (E=7e-266) FY | FY; protein binding

Coordinates

chrA03:-:2492429..2496643

Molecular Weight (calculated)

73709.0 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.777

Length

662 amino acids

Sequence
(BLAST)

001: MYGGDSMQQQ QQLPPMQNQH HVAAGGPPMH PPPMMRHPSA SSTNINPDYH HPSAPNPFDS HVDSFGAKRM RKHTQRKAVD YTSTVVRYIQ ARTWQRDSRD
101: MTSLQPTPAA AVDMLPPVAY SDNPSTSFGA KFVHSSLNKN RCSINCVLWT PSGRRLITGS QSGEFTLWNG QSFNFEMILQ AHDQPIRSMV WSHNDIWMVS
201: GDDGGTLKYW QSNMNNVKAN RTAHKESIRD LSFCKTDLKF CSCSDDTTVK VWDFTKCQEE ITLTGHGWDV KCVDWHPTKS LLVSGGKDQL VKIWDARTAR
301: ELCSLHGHKN MVLSVKWNQN GNLLLTASKD QIIKLYDIRT MKELESFRGH TKDVTSLAWH PSHEEYFVSG SLDGSICHWI VGHENPQIEI PNAHDNSVWD
401: LAWHPIGYLL CSGSNDHTTK FWCRNRPGDN PRDALTMQNQ GYNEQGFGNR MPDNFQPSEA SPTPGAFVPG LTRNEGTIPG IGIAMSFDGS SQGEHKQPLP
501: GGMAPPLPPG PHPSLIGISQ QQGYQQQPHH HQGHPQQIPP MPNMPHLQRP PSSHMPLHPH HPRPMQVPSH GHMPPSSMPM PHQMPGPMGM QGGINPQMSQ
601: GHYMGPPSGA FQGPPSSGGP IYPQGRGFNR PQMMPGYNNP FQQQPQPPLP GGPPPNTNQQ HQ

Best Arabidopsis Sequence Match ( AT5G13480.3 )
(BLAST)

001: MPQPPMMRQS SASSTNINPD YHHPSGPFDP NVDSFGAKRM RKHTQRRAVD YTSTVVRYIQ ARTWQRDSRD RTTLQPTPAA AVDMLPTVAY SDNPSTSFAA
101: KFVHASLNKN RCSINRVLWT PSGRRLITGS QSGEFTLWNG QSFNFEMILQ AHDQPIRSMV WSHNENYMVS GDDGGTLKYW QNNMNNVKAN KTAHKESIRD
201: LSFCKTDLKF CSCSDDTTVK VWDFTKCVDE SSLTGHGWDV KSVDWHPTKS LLVSGGKDQL VKLWDTRSGR ELCSLHGHKN IVLSVKWNQN GNWLLTASKD
301: QIIKLYDIRT MKELQSFRGH TKDVTSLAWH PCHEEYFVSG SSDGSICHWI VGHENPQIEI PNAHDNSVWD LAWHPIGYLL CSGSNDHTTK FWCRNRPADN
401: PRDVLMQNQG YNEQGFGRQP DNFQPSEASP IPGAFVPGLT RNEGTIPGIG IAMPFDASSQ GDHKQPLPGS MALGAPPLPP GPHPSLLGSG QQQGYQQQQQ
501: HQGHPQQMLP MPNMPHHQLP PSSHMPLHPH HLPRPMQMPP HGHMPPPSMP MSHQMPGSMG MQGGMNPQMS QSHFMGAPSG VFQGQPNSGG PQMYPQGRGG
601: FNRPQMIPGY NNPFQQVPFK H

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.