Factsheet for TraesCS5B01G292800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G300900.1	Wheat	nucleus	99.3	99.3
TraesCS5A01G293600.2	Wheat	nucleus	98.74	99.02
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	94.95	89.91
EES04226	Sorghum	nucleus	81.91	81.79
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	81.63	81.06
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	29.45	74.2
GSMUA_Achr4P29380_001	Banana	nucleus	65.08	65.26
Bra006202.1-P	Field mustard	nucleus	59.19	63.75
KRH13395	Soybean	nucleus	63.53	63.45
KRH20750	Soybean	nucleus	63.67	63.41
AT5G13480.2	Thale cress	nucleus	58.06	63.01
Bra023416.1-P	Field mustard	nucleus	57.08	62.91
VIT_13s0019g00220.t01	Wine grape	nucleus	66.06	60.93
Solyc08g067040.2.1	Tomato	nucleus	62.97	58.77
CDY01533	Canola	plastid	11.78	53.16
TraesCS2B01G224500.1	Wheat	plastid	11.64	25.0
TraesCS4B01G056500.1	Wheat	cytosol	10.24	22.6
TraesCS6B01G275200.2	Wheat	cytosol	8.7	20.67
TraesCS7B01G406900.1	Wheat	cytosol, plastid	9.12	18.79
TraesCS1B01G374800.1	Wheat	cytosol	10.24	18.53
TraesCS1B01G478100.1	Wheat	cytosol	11.22	16.81
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	9.96	14.64
TraesCS3B01G205300.1	Wheat	cytosol	9.82	14.61
TraesCS3B01G349000.2	Wheat	cytosol	11.64	9.99
TraesCS1B01G181100.1	Wheat	cytosol	11.22	9.71
TraesCS2B01G591600.2	Wheat	cytosol	12.06	9.38

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5B01G292800	EnsemblPlants:TraesCS5B01G292800.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg

Description

No Description!

Coordinates

chr5B:-:478305258..478316832

Molecular Weight (calculated)

79477.0 Da

IEP (calculated)

9.107

GRAVY (calculated)

-0.749

Length

713 amino acids

Sequence
(BLAST)

001: MMQQQQQQQQ QPLPPPPPQH PPPQPGGGGG DFYRGPLQPP MRQLSAASST NLAPDYAGHP GPQQHHQQQQ HQQQQQQPPF DAYGDNFGAK RMRKPVQRRT
101: VDYTSSLVRY AQARMWQRDA RDRFTLQPTA AAVLDMLPSV AYPDNPSTSF AGKFVHSSIN KNRCSINCVV WTPTGRRLIT GSQSGEFTLW NGQSFNFEMI
201: LQAHEQAVRS MIWSHNENWM VTGDDGGAIK YWQSNMNNVK VNKTAHRESV RDLSFCRTDL KFCSCSDDTT VKVWDFARCQ EERSLTGHGW DVKSVDWHPT
301: KSLLASGGKD YLVKLWDAKS GRELRSFHGH KNIVQCVKWN QNGNWVLTAS KDQIIKLYDI RSMKELESFR GHNKDVTALA WHPFHEEYFV SGSYDGGIFH
401: WLVGHEAPQI EINNAHDNSV WDLAWHPVGY LLSSGGNDHA TRFWCRNRPG DLTRDKFNSG QIQGYGDQHS AFAGRFQMPE QTPGPFAGTI PGIGVAMHLD
501: GSDHGEQRPS IPGLPPGPPP LPPGPHPSLL PTGQQQHYQQ MPQQQHSQFR PPPPNMPPPA HILQHQQGPR SSLPQLPSMP GSMPGPSPVN PPLPPMPHPM
601: AMQGSSTQMM PQMPQHLIGL NQTHPGSIPP GNMPPMGSFP NGMGNIQGSS GASGMQNFPM GGMYNRPQGQ MAPQGQMSSI PGLGSYQGWA MLAFHHRRRS
701: ILRLAVQHHS EIM

Best Arabidopsis Sequence Match ( AT5G13480.4 )
(BLAST)

001: MPQPPMMRQS SASSTNINPD YHHPSGPFDP NVDSFGAKRM RKHTQRRAVD YTSTVVRYIQ ARTWQRDSRD RTTLQPTPAA AVDMLPTVAY SDNPSTSFAA
101: KFVHASLNKN RCSINRVLWT PSGRRLITGS QSGEFTLWNG QSFNFEMILQ AHDQPIRSMV WSHNENYMVS GDDGGTLKYW QNNMNNVKAN KTAHKESIRD
201: LSFCKTDLKF CSCSDDTTVK VWDFTKCVDE SSLTGHGWDV KSVDWHPTKS LLVSGGKDQL VKLWDTRSGR ELCSLHGHKN IVLSVKWNQN GNWLLTASKD
301: QIIKLYDIRT MKELQSFRGH TKDVTSLAWH PCHEEYFVSG SSDGSICHWI VGHENPQIEI PNAHDNSVWD LAWHPIGYLL CSGSNDHTTK FWCRNRPADN
401: PRDVLMQNQG YNEQGFGRQP DNFQPSEASP IPGAFVPGLT RNEGTIPGIG IAMPFDASSQ GDHKQPLPGS MALGAPPLPP GPHPSLLGSG QQQGYQQQQQ
501: HQGHPQQMLP MPNMPHHQLP PSSHMPLHPH HLPRPMQMPP HGHMPPPSMP MSHQMPGSMG MQGGMNPQMS QSHFMGAPSG VFQGQPNSGG PQMYPQGRGG
601: FNRPQMIPGY NNPFQQQQQP PLPPGPPPNN NQQHQ

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.