Factsheet for Solyc08g067040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g00220.t01	Wine grape	nucleus	76.57	75.68
KRH13395	Soybean	nucleus	70.03	74.93
KRH20750	Soybean	nucleus	68.06	72.63
CDX70506	Canola	nucleus	58.25	70.75
CDX78524	Canola	nucleus	60.73	69.46
CDX91118	Canola	nucleus	58.38	69.25
AT5G13480.2	Thale cress	nucleus	59.55	69.25
Bra023416.1-P	Field mustard	nucleus	58.64	69.24
Bra006202.1-P	Field mustard	nucleus	59.82	69.03
CDX85646	Canola	nucleus	58.25	68.78
GSMUA_Achr4P29380_001	Banana	nucleus	63.74	68.5
EES04226	Sorghum	nucleus	61.13	65.41
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	60.86	64.76
TraesCS5A01G293600.2	Wheat	nucleus	58.64	63.01
TraesCS5D01G300900.1	Wheat	nucleus	58.77	62.97
TraesCS5B01G292800.1	Wheat	nucleus	58.77	62.97
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	60.08	60.96
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	19.37	52.3
Solyc09g065290.2.1	Tomato	cytosol, plastid	9.95	24.13
Solyc02g091790.2.1	Tomato	cytosol, nucleus	9.29	22.61
Solyc03g059100.1.1	Tomato	nucleus	8.9	20.86
Solyc09g010620.1.1	Tomato	cytosol	4.19	19.63
Solyc11g005550.1.1	Tomato	cytosol	7.2	18.39
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	9.29	17.88
Solyc03g112530.2.1	Tomato	nucleus	10.86	17.26
Solyc01g094480.2.1	Tomato	nucleus	10.21	16.18
Solyc03g111740.2.1	Tomato	cytosol	9.29	14.73
Solyc02g021360.2.1	Tomato	cytosol	12.83	12.28
Solyc04g008720.2.1	Tomato	cytosol	12.57	11.85
Solyc02g078800.2.1	Tomato	extracellular	11.52	8.55

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005847	GO:GO:0006139	GO:GO:0006378	GO:GO:0006379	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009909
GO:GO:0009987	GO:GO:0080008	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CLT0
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	SMART:SM00320
SUPFAM:SSF50978	SUPFAM:SSF81995	EnsemblPlantsGene:Solyc08g067040.2	EnsemblPlants:Solyc08g067040.2.1	UniParc:UPI000276C096	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

Flowering time control protein FY [Source:Projected from Arabidopsis thaliana (AT5G13480) UniProtKB/Swiss-Prot;Acc:Q6NLV4]

Coordinates

chr8:+:55944760..55960863

Molecular Weight (calculated)

84541.9 Da

IEP (calculated)

8.511

GRAVY (calculated)

-0.805

Length

764 amino acids

Sequence
(BLAST)

001: MASGDPHQHQ QHQHPPLPQQ QFQQQHQQQP QQQPQQQHQQ QPQQQHQQQH QQLHQQQHPP HFGEFPRGPQ PLPGPPPMMR QPSASSTTLN SQLPGPPPHP
101: SYDAHADSFA AKRMRKIGQR RAVDYTSTVV RYMQIRMWQR DSRDRTVLQP SPAAAVDILP AVAYLDNPST SFAAKFVHTS LNKNRCSINC LAWTPSGRRL
201: VTGSQSGEFT LWNGQSFNFE MILQAHDQAV RSMVWSHNDN WMVTGDDGGT IKYWQNNMNN VKAHKNAHKE SIRELSFCST DLKFCSCSDD TTVKIWDFAR
301: CQEERSLSGH GWDVKSVDWH PTKSLLVSGG KDNLVKLWDA KSGKELSSFH GHKNTVLCVK WNQNGNWVLT ASKDQIIKLY DIRAMKEVES FRGHQKDVTS
401: LAWHPFHEEY FVSGSFDGSI FHWLVGHEAP QVEITNAHET GVWDLAWHPI GYLLCSGSND QTTKFWCRNR PGDSARDKFN LGQQGLGDQH NVLGRMPGNF
501: PGPEPPSTPG AFASGMLRTE GTIPGVGAAM PLSIPSLDSP SQGEQKTSMP LGAPPLPPGP HPSLLASNQQ QAYQQNMQQA QQQSLPQQMT SLPLQPPNLP
601: QLQPPHMPLM PHPHLPRPPH QLQPVNMPGI QSSMPGSGPI QGMPPMGIQG NMNQMGPPMP QGHFVGMPPG SGPQGNVPPG GMPNGLPNMQ GPQNAGGNQM
701: FPPVRGFNRP QAGQMPLMPG LNPYQQSGNP NTPPGMHMQS NFGHQSGMPP PLPPGPPPHN QGHQ

Best Arabidopsis Sequence Match ( AT5G13480.3 )
(BLAST)

001: MPQPPMMRQS SASSTNINPD YHHPSGPFDP NVDSFGAKRM RKHTQRRAVD YTSTVVRYIQ ARTWQRDSRD RTTLQPTPAA AVDMLPTVAY SDNPSTSFAA
101: KFVHASLNKN RCSINRVLWT PSGRRLITGS QSGEFTLWNG QSFNFEMILQ AHDQPIRSMV WSHNENYMVS GDDGGTLKYW QNNMNNVKAN KTAHKESIRD
201: LSFCKTDLKF CSCSDDTTVK VWDFTKCVDE SSLTGHGWDV KSVDWHPTKS LLVSGGKDQL VKLWDTRSGR ELCSLHGHKN IVLSVKWNQN GNWLLTASKD
301: QIIKLYDIRT MKELQSFRGH TKDVTSLAWH PCHEEYFVSG SSDGSICHWI VGHENPQIEI PNAHDNSVWD LAWHPIGYLL CSGSNDHTTK FWCRNRPADN
401: PRDVLMQNQG YNEQGFGRQP DNFQPSEASP IPGAFVPGLT RNEGTIPGIG IAMPFDASSQ GDHKQPLPGS MALGAPPLPP GPHPSLLGSG QQQGYQQQQQ
501: HQGHPQQMLP MPNMPHHQLP PSSHMPLHPH HLPRPMQMPP HGHMPPPSMP MSHQMPGSMG MQGGMNPQMS QSHFMGAPSG VFQGQPNSGG PQMYPQGRGG
601: FNRPQMIPGY NNPFQQVPFK H

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.