Factsheet for GSMUA_Achr4P29380_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plasma membrane 1
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04226	Sorghum	nucleus	69.48	69.19
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	69.2	68.52
KRH13395	Soybean	nucleus	68.5	68.21
VIT_13s0019g00220.t01	Wine grape	nucleus	73.7	67.79
AT5G13480.2	Thale cress	nucleus	61.6	66.67
KRH20750	Soybean	nucleus	66.95	66.48
Bra023416.1-P	Field mustard	nucleus	60.34	66.31
Bra006202.1-P	Field mustard	nucleus	61.46	66.01
TraesCS5A01G293600.2	Wheat	nucleus	65.26	65.26
TraesCS5D01G300900.1	Wheat	nucleus	65.4	65.22
TraesCS5B01G292800.1	Wheat	nucleus	65.26	65.08
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	67.65	63.88
Solyc08g067040.2.1	Tomato	nucleus	68.5	63.74
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	23.49	59.01
CDY01533	Canola	plastid	10.97	49.37
GSMUA_Achr8P10200_001	Banana	cytosol	3.38	26.97
GSMUA_Achr2P08580_001	Banana	cytosol	9.56	23.94
GSMUA_Achr6P13100_001	Banana	cytosol	9.42	22.04
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	10.41	21.96
GSMUA_Achr7P01850_001	Banana	plastid	6.61	20.09
GSMUA_Achr3P04370_001	Banana	cytosol	9.0	19.88
GSMUA_Achr8P28660_001	Banana	cytosol	9.28	19.58
GSMUA_Achr11P...	Banana	cytosol	9.28	19.13
GSMUA_Achr8P10210_001	Banana	cytosol	2.25	16.84
GSMUA_Achr3P29050_001	Banana	nucleus	11.25	16.74
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	10.27	15.02
GSMUA_Achr3P27210_001	Banana	golgi	9.85	14.8
GSMUA_Achr2P06000_001	Banana	cytosol	9.7	14.56
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	12.52	11.22
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	1.41	10.64
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	3.8	9.78
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	4.64	8.89
GSMUA_Achr1P08830_001	Banana	cytosol	11.96	8.78
GSMUA_Achr9P23740_001	Banana	golgi	12.94	8.78

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007275	GO:GO:0008150
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009908	GO:GO:0009909	GO:GO:0080008
EnsemblPlantsGene:GSMUA_Achr4G29380_001	EnsemblPlants:GSMUA_Achr4P29380_001	EnsemblPlants:GSMUA_Achr4T29380_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0ST50	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294C988	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

Flowering time control protein FY [Source:GMGC_GENE;Acc:GSMUA_Achr4G29380_001]

Coordinates

chr4:+:27362081..27375287

Molecular Weight (calculated)

77611.1 Da

IEP (calculated)

8.191

GRAVY (calculated)

-0.489

Length

711 amino acids

Sequence
(BLAST)

001: MMYGEQPHNP EFSRAPPPPS RQPSASSTNL APDFPRPPAP YEAYGDSFAA RRMRKVVQRR AVDYTSTVVR YMQVRMWQRD VGDRTALQPT PAAVLDILPT
101: AAYADNPSIS FAAKFVHAST NKNRCSINRV LWTPTGRRLI TGSQSGEFTL WNGQSFNFEM ILQAHDNAIR SMIWSHNDNW MVTGDDGGAI KYWQSNMNNV
201: KANKTAHKES VRDLSFCRTD LKFCSCSDDT TVKVWDFARC QEERSLTGHG WDVKSVDWHP TKSLLVSGGK DNLIKLWDAK TGKELCSFHG HKNTVLCVKW
301: NQNGNWVLTA SKDQIIKLYD IRSMKELESF RGHTKDVTAL AWHPFHEEYF ASGSFDGSIF HWLVGHETPQ VEIPSAHDNS VWDLAWHPIG YLLCSGSNDH
401: TTKFWCRNRP GDLSRDKYSL GQTPGYGDQN PILSGRGASG FSASEPPPTP GPFAVGLSRN EGTIPGIGVA MPLSVPSIDG SDQGEQRQPF PGNMPPGAPP
501: LPPGPHPSLL ASGQQQVYQQ VPPVHQQHQP FSQQMPSMPI STNLPQLQPP LLPHPHGPPP RPPLAPLGMS ASYPSSIPGS MPMPSSLVPS MTPSFPNSMM
601: MQGSATQMPQ AHMMGINQMN PGSVTSSNIP PAIGGFANPM ANIQGTSTSG LQNFQIGGVF NLPQGGQMAP IPGLNAYQPG MMDVRVPGMA LGGNIGMPPP
701: PPTMPHGSAP Q

Best Arabidopsis Sequence Match ( AT5G13480.1 )
(BLAST)

001: MYAGGDMHRG SQMPQPPMMR QSSASSTNIN PDYHHPSGPF DPNVDSFGAK RMRKHTQRRA VDYTSTVVRY IQARTWQRDS RDRTTLQPTP AAAVDMLPTV
101: AYSDNPSTSF AAKFVHASLN KNRCSINRVL WTPSGRRLIT GSQSGEFTLW NGQSFNFEMI LQAHDQPIRS MVWSHNENYM VSGDDGGTLK YWQNNMNNVK
201: ANKTAHKESI RDLSFCKTDL KFCSCSDDTT VKVWDFTKCV DESSLTGHGW DVKSVDWHPT KSLLVSGGKD QLVKLWDTRS GRELCSLHGH KNIVLSVKWN
301: QNGNWLLTAS KDQIIKLYDI RTMKELQSFR GHTKDVTSLA WHPCHEEYFV SGSSDGSICH WIVGHENPQI EIPNAHDNSV WDLAWHPIGY LLCSGSNDHT
401: TKFWCRNRPA DNPRDVLMQN QGYNEQGFGR QPDNFQPSEA SPIPGAFVPG LTRNEGTIPG IGIAMPFDAS SQGDHKQPLP GSMALGAPPL PPGPHPSLLG
501: SGQQQGYQQQ QQHQGHPQQM LPMPNMPHHQ LPPSSHMPLH PHHLPRPMQM PPHGHMPPPS MPMSHQMPGS MGMQGGMNPQ MSQSHFMGAP SGVFQGQPNS
601: GGPQMYPQGR GGFNRPQMIP GYNNPFQQQQ QPPLPPGPPP NNNQQHQ

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.