Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 57.14 | 26.73 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 57.14 | 20.23 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 40.16 | 15.39 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 10.51 | 8.25 |
| GSMUA_Achr4P10720_001 | Banana | cytosol, plastid | 5.93 | 6.53 |
| GSMUA_Achr8P10210_001 | Banana | cytosol | 1.62 | 6.32 |
| GSMUA_Achr2P08580_001 | Banana | cytosol | 4.58 | 5.99 |
| GSMUA_Achr7P01850_001 | Banana | plastid | 3.77 | 5.98 |
| GSMUA_Achr8P28660_001 | Banana | cytosol | 5.12 | 5.64 |
| GSMUA_Achr4P29380_001 | Banana | nucleus | 8.89 | 4.64 |
| GSMUA_Achr11P... | Banana | cytosol | 4.31 | 4.64 |
| GSMUA_Achr6P13100_001 | Banana | cytosol | 3.77 | 4.61 |
| GSMUA_Achr3P29050_001 | Banana | nucleus | 5.12 | 3.97 |
| KRH35010 | Soybean | nucleus | 1.62 | 3.73 |
| GSMUA_Achr3P04370_001 | Banana | cytosol | 2.96 | 3.42 |
| GSMUA_Achr2P06000_001 | Banana | cytosol | 4.31 | 3.38 |
| GSMUA_Achr8P10200_001 | Banana | cytosol | 0.81 | 3.37 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 4.31 | 3.29 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 0.81 | 3.19 |
| GSMUA_Achr8P10190_001 | Banana | cytosol, plastid | 1.35 | 1.81 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P27200_001 | EnsemblPlants:GSMUA_Achr3T27200_001 | EnsemblPlantsGene:GSMUA_Achr3G27200_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Katanin_C-terminal | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | PFAM:PF13925 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000296A0C6 | UniProt:M0SI86 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G27200_001]
Coordinates
chr3:-:26770628..26775425
Molecular Weight (calculated)
42124.4 Da
IEP (calculated)
8.055
GRAVY (calculated)
0.018
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHWISYIVK FLLHNLFCLI SCFSQVLLSL DGCCKFSYIL IQHAEFMFLF SPGYVIIIEI TLLYSRTNMR AWRYNYPNLK EYDQLKLLGF FLMKNVVLSR
101: KETKIDVHMN VDESWVCVTQ PIQESNNIRI HKPKEACSFD IPKGGRTRSL VATWERREHS PSYDQPRLSN SSETGATSSS PYSLRGRNRF AEKETVPASD
201: EDAIAVLLGK HDQFLNLAQS RLIKLQVVCQ LWERNDVKGV IDTIEKMSDH AVCADVLSSL KDKSEIITLD ICASLLPLLT GLLESKIDRH LSVSLEMLLK
301: LVKIFVPVIR STLSAGPSVG VDLQAEQRLE RCNLCFIELE KIKNSISSLI RRGGSIGKAA QELNLALQEV L
101: KETKIDVHMN VDESWVCVTQ PIQESNNIRI HKPKEACSFD IPKGGRTRSL VATWERREHS PSYDQPRLSN SSETGATSSS PYSLRGRNRF AEKETVPASD
201: EDAIAVLLGK HDQFLNLAQS RLIKLQVVCQ LWERNDVKGV IDTIEKMSDH AVCADVLSSL KDKSEIITLD ICASLLPLLT GLLESKIDRH LSVSLEMLLK
301: LVKIFVPVIR STLSAGPSVG VDLQAEQRLE RCNLCFIELE KIKNSISSLI RRGGSIGKAA QELNLALQEV L
001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.