Factsheet for GSMUA_Achr3P27210_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	85.84	51.2
VIT_10s0071g01150.t01	Wine grape	cytosol	72.3	42.91
KRG93160	Soybean	cytosol	66.81	41.63
KRH56498	Soybean	cytosol	65.54	40.84
Solyc02g021360.2.1	Tomato	cytosol	68.5	40.6
GSMUA_Achr9P23740_001	Banana	golgi	86.26	38.93
Solyc04g008720.2.1	Tomato	cytosol	64.48	37.65
PGSC0003DMT400065114	Potato	cytosol	63.85	37.24
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	65.12	36.8
CDX88026	Canola	cytosol	64.06	36.55
CDY60225	Canola	cytosol	63.85	36.17
CDX81101	Canola	cytosol	63.64	35.79
Zm00001d026621_P006	Maize	cytosol	68.29	35.49
AT5G08390.1	Thale cress	cytosol	62.37	35.16
Zm00001d001828_P033	Maize	cytosol	68.5	35.14
KXG27434	Sorghum	cytosol	68.29	35.11
Bra005990.1-P	Field mustard	cytosol	62.79	35.02
CDX80363	Canola	cytosol	62.79	34.94
TraesCS2D01G561900.1	Wheat	cytosol	67.23	34.38
TraesCS2A01G592600.1	Wheat	cytosol	67.02	34.27
TraesCS2B01G591600.2	Wheat	cytosol	65.33	33.7
Bra009683.1-P	Field mustard	cytosol	63.0	32.89
GSMUA_Achr8P10200_001	Banana	cytosol	5.92	31.46
Os04t0677700-00	Rice	cytosol	58.99	31.35
GSMUA_Achr1P08830_001	Banana	cytosol	53.49	26.14
GSMUA_Achr8P28660_001	Banana	cytosol	13.53	18.99
GSMUA_Achr3P04370_001	Banana	cytosol	12.9	18.94
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	13.11	18.4
GSMUA_Achr7P01850_001	Banana	plastid	8.67	17.52
GSMUA_Achr2P08580_001	Banana	cytosol	10.36	17.25
GSMUA_Achr11P...	Banana	cytosol	12.47	17.1
GSMUA_Achr6P13100_001	Banana	cytosol	10.15	15.79
GSMUA_Achr3P29050_001	Banana	nucleus	15.43	15.27
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	15.01	14.61
GSMUA_Achr2P06000_001	Banana	cytosol	13.74	13.71
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	2.54	12.77
GSMUA_Achr8P10210_001	Banana	cytosol	2.33	11.58
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	8.25	10.51
GSMUA_Achr4P29380_001	Banana	nucleus	14.8	9.85
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	5.07	8.7

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043	GO:GO:0051013
EnsemblPlantsGene:GSMUA_Achr3G27210_001	EnsemblPlants:GSMUA_Achr3P27210_001	EnsemblPlants:GSMUA_Achr3T27210_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Katanin_bsu1	UniProt:M0SI87	HAMAP:MF_03022	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978
SignalP:SignalP-noTM	UniParc:UPI000294863F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G27210_001]

Coordinates

chr3:-:26775463..26782196

Molecular Weight (calculated)

51818.2 Da

IEP (calculated)

7.565

GRAVY (calculated)

-0.288

Length

473 amino acids

Sequence
(BLAST)

001: MATTKRAYKL RILLVAHFLL NLEEFVAHSS NVNCLKIGRR TSRVLVTGGE DHKVNLWAIG KPNAILSLSG HISAVESVSF DSSEVLVAAG AASGSIKLWD
101: LEEAKIVRTL TGHRSNCIAV DFHPFGEFFA SGSLDTNLKI WDIRRKGCIH TYKGHTRGVN AIKFTPDGRW VVSGGEDNIV KLWDLTAGKL LHDFKFHEGQ
201: IRCIDFHPHE FLLATGSADR TVKFWDLETF ELIGSAGPET SGVRSMTFNP DGRTLLCGLH ESLKVFSWEP IKCHDAVDVG WSRLSDMNIH EGKLLGCSYN
301: QSCVGVWVVD LSRIEPYAIA SAANLNGHSE PKSASSGSVS MQADNNIKSS MGRLSSSEPN AKETKPVACR TIPCDIQSKS ANFRKVSNIN ENSERADMSV
401: QSGFVGSRTT EQNELMDQTA ISSGNSVTQR VTGGETNLDD VKCVTTGRPG ANLFRESSAN YDHENRKCRS INL

Best Arabidopsis Sequence Match ( AT5G23430.2 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARGGLV AKSVLELNLA FQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.