Factsheet for GSMUA_Achr3P29050_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g00360.t01	Wine grape	nucleus	87.03	87.21
KRH08668	Soybean	nucleus	84.1	83.75
PGSC0003DMT400046634	Potato	cytosol	84.1	83.58
Solyc03g112530.2.1	Tomato	nucleus	84.1	83.58
KRH70275	Soybean	nucleus	83.05	82.71
TraesCS1A01G443600.1	Wheat	cytosol	79.92	80.42
TraesCS1B01G478100.1	Wheat	cytosol	79.71	80.04
TraesCS1D01G451700.1	Wheat	cytosol	79.5	80.0
EES18812	Sorghum	cytosol	79.92	79.75
AT5G52820.1	Thale cress	cytosol	77.41	78.22
CDX96156	Canola	cytosol	77.62	77.94
Zm00001d039211_P006	Maize	cytosol	80.75	77.67
CDY27046	Canola	cytosol	76.99	77.31
CDX84790	Canola	cytosol	76.99	77.31
Bra022611.1-P	Field mustard	cytosol	76.99	77.31
HORVU1Hr1G095080.1	Barley	cytosol, plastid	79.71	75.75
Bra003111.1-P	Field mustard	nucleus	35.98	74.14
CDY52843	Canola	nucleus	35.77	73.71
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	47.28	70.85
CDY09645	Canola	cytosol	67.99	68.71
VIT_13s0064g00330.t01	Wine grape	extracellular	15.9	58.02
GSMUA_Achr7P01850_001	Banana	plastid	17.15	35.04
GSMUA_Achr8P10200_001	Banana	cytosol	6.28	33.71
GSMUA_Achr2P08580_001	Banana	cytosol	18.62	31.34
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	19.67	27.89
GSMUA_Achr3P04370_001	Banana	cytosol	16.74	24.84
GSMUA_Achr6P13100_001	Banana	cytosol	15.06	23.68
GSMUA_Achr8P28660_001	Banana	cytosol	16.11	22.85
GSMUA_Achr11P...	Banana	cytosol	16.11	22.32
GSMUA_Achr2P06000_001	Banana	cytosol	17.99	18.14
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	3.56	18.09
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	17.57	17.28
GSMUA_Achr3P27210_001	Banana	golgi	15.27	15.43
GSMUA_Achr8P10210_001	Banana	cytosol	2.51	12.63
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	6.69	11.59
GSMUA_Achr4P29380_001	Banana	nucleus	16.74	11.25
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	16.53	9.96
GSMUA_Achr1P08830_001	Banana	cytosol	16.53	8.16
GSMUA_Achr9P23740_001	Banana	golgi	16.11	7.35
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	3.97	5.12
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.63	1.35

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	EnsemblPlantsGene:GSMUA_Achr3G29050_001
EnsemblPlants:GSMUA_Achr3P29050_001	EnsemblPlants:GSMUA_Achr3T29050_001	InterPro:Gprotein_B	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0SIS1	InterPro:NLE	PFAM:PF00400	PFAM:PF08154	PRINTS:PR00319	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19848	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SUPFAM:SSF50998	UniParc:UPI0002950CCB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom

Description

Notchless protein homolog [Source:GMGC_GENE;Acc:GSMUA_Achr3G29050_001]

Coordinates

chr3:-:28362497..28370734

Molecular Weight (calculated)

53025.2 Da

IEP (calculated)

8.162

GRAVY (calculated)

-0.339

Length

478 amino acids

Sequence
(BLAST)

001: MEVMEEGSEI SSSNTVMCLL TDPEGEPLGA PLYLPQNAGP PQLQEIVNKL LKNEEKMPYA FYISDQELIV QLGSYLQKNK VSVEKVLRIV YQPQALFRIR
101: PVNRCSATIA GHTEAVLSVS FSPDGQNLAS GSGDTTVRLW DLNTQTPLFT CSGHKNWVLC IAWSSDGKHL VSGSKAGELL TWDPQTGKQS GGPLLGHKKW
201: ITGISWEPVH LQAPCRRFVS SSKDGDARIW DISLRKCVIC LSGHTLAVTC VKWGGDGMIY TGSQDCTIKV WETSQGKLIR ELKGHGHWVN SLALSTEYIL
301: RTGAFDHTRK TYSSPEEMKE AALARYNQMK GNAPERLVSG SDDFTMFLWE PALSKHPKAR MTGHQQLVNH VYFSPDGQWL ASASFDKSVK LWNGITGKFV
401: ASFRGHVGPV YQISWSADSR LLLSGSKDST LKVWDIRTQK LKQDLPGHAD EVFSVDWSPD GEKVASGGKD RVLKLWMN

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.