Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P10720_001 | Banana | cytosol, plastid | 84.86 | 71.51 |
| TraesCS4D01G056800.1 | Wheat | cytosol | 77.46 | 68.75 |
| TraesCS4B01G056500.1 | Wheat | cytosol | 78.17 | 68.73 |
| OQU91075 | Sorghum | cytosol | 77.11 | 68.65 |
| Zm00001d033849_P002 | Maize | extracellular, nucleus | 76.76 | 68.34 |
| TraesCS4A01G258000.1 | Wheat | cytosol | 77.46 | 68.11 |
| VIT_07s0205g00150.t01 | Wine grape | cytosol | 73.94 | 67.09 |
| Os03t0725400-02 | Rice | cytosol | 76.06 | 66.67 |
| HORVU4Hr1G009500.1 | Barley | cytosol, plastid | 77.82 | 63.69 |
| Solyc02g091790.2.1 | Tomato | cytosol, nucleus | 68.66 | 62.1 |
| PGSC0003DMT400078695 | Potato | cytosol | 68.31 | 61.78 |
| GSMUA_Achr7P01850_001 | Banana | plastid | 50.7 | 61.54 |
| KRH50874 | Soybean | nucleus | 69.37 | 59.88 |
| AT3G49660.1 | Thale cress | cytosol | 66.2 | 59.31 |
| KRH02239 | Soybean | nucleus | 67.96 | 58.31 |
| CDX86957 | Canola | cytosol | 61.97 | 56.41 |
| CDY00226 | Canola | cytosol, nucleus, plastid | 61.62 | 55.56 |
| Bra019610.1-P | Field mustard | plastid | 61.97 | 55.52 |
| GSMUA_Achr6P13100_001 | Banana | cytosol | 27.11 | 25.33 |
| GSMUA_Achr3P04370_001 | Banana | cytosol | 26.06 | 22.98 |
| GSMUA_Achr8P10200_001 | Banana | cytosol | 7.04 | 22.47 |
| GSMUA_Achr3P29050_001 | Banana | nucleus | 31.34 | 18.62 |
| GSMUA_Achr8P28660_001 | Banana | cytosol | 20.77 | 17.51 |
| GSMUA_Achr11P... | Banana | cytosol | 21.13 | 17.39 |
| GSMUA_Achr2P06000_001 | Banana | cytosol | 21.13 | 12.66 |
| GSMUA_Achr8P10210_001 | Banana | cytosol | 4.23 | 12.63 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 21.48 | 12.55 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 3.87 | 11.7 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 17.25 | 10.36 |
| GSMUA_Achr4P29380_001 | Banana | nucleus | 23.94 | 9.56 |
| GSMUA_Achr8P10190_001 | Banana | cytosol, plastid | 9.15 | 9.42 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 19.72 | 7.06 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 18.66 | 5.48 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 19.01 | 5.15 |
| GSMUA_Achr3P27200_001 | Banana | golgi, plasma membrane, vacuole | 5.99 | 4.58 |
Protein Annotations
| MapMan:12.3.3.2.3 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSMUA_Achr2G08580_001 | EnsemblPlants:GSMUA_Achr2P08580_001 | EnsemblPlants:GSMUA_Achr2T08580_001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:M0S699 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR22847 | PANTHER:PTHR22847:SF602 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000294A31E | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
WD repeat-containing protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr2G08580_001]
Coordinates
chr2:+:12528105..12531041
Molecular Weight (calculated)
30893.4 Da
IEP (calculated)
6.390
GRAVY (calculated)
-0.158
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEMASAEPP STAAALSQPY VLQQTLTGHE RAVSAVKFSP DGSLLASASA DKILRVWSTA DFSLRAELSG HDEGISDLCF SSDGRYLCSA SDDRTTVRVW
101: EVKSGKCLRV LPAHSEPVTA VDFNRDGTLI VSSSYDGLCR IWDAATGHCV KTLIDDESPP VSFVRFSPNG KFVLTATLDS TLRLWNFSAG KFLKTYTGHV
201: NSKFCIPATF SVTNGKYIVS GSEDNCVYLW DLQTRKIVQK LEGHTDTVIA VSCHPSENMI ASGALSNDKT VKIWAQRSEG QLKD
101: EVKSGKCLRV LPAHSEPVTA VDFNRDGTLI VSSSYDGLCR IWDAATGHCV KTLIDDESPP VSFVRFSPNG KFVLTATLDS TLRLWNFSAG KFLKTYTGHV
201: NSKFCIPATF SVTNGKYIVS GSEDNCVYLW DLQTRKIVQK LEGHTDTVIA VSCHPSENMI ASGALSNDKT VKIWAQRSEG QLKD
001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE
Arabidopsis Description
WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.