Factsheet for Zm00001d033849_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91075	Sorghum	cytosol	97.81	97.81
TraesCS4D01G056800.1	Wheat	cytosol	89.97	89.69
TraesCS4B01G056500.1	Wheat	cytosol	90.28	89.16
TraesCS4A01G258000.1	Wheat	cytosol	89.97	88.85
Os03t0725400-02	Rice	cytosol	86.83	85.49
HORVU4Hr1G009500.1	Barley	cytosol, plastid	90.6	83.29
GSMUA_Achr2P08580_001	Banana	cytosol	68.34	76.76
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	74.61	70.62
VIT_07s0205g00150.t01	Wine grape	cytosol	66.46	67.73
PGSC0003DMT400078695	Potato	cytosol	66.46	67.52
Solyc02g091790.2.1	Tomato	cytosol, nucleus	66.14	67.2
KRH50874	Soybean	nucleus	67.4	65.35
AT3G49660.1	Thale cress	cytosol	63.95	64.35
KRH02239	Soybean	nucleus	65.52	63.14
CDX86957	Canola	cytosol	59.56	60.9
CDY00226	Canola	cytosol, nucleus, plastid	59.87	60.63
Bra019610.1-P	Field mustard	plastid	60.19	60.57
Zm00001d021866_P001	Maize	plastid	57.05	55.49
Zm00001d021868_P001	Maize	plastid	56.43	54.88
Zm00001d050708_P002	Maize	cytosol	26.33	27.72
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	27.9	27.3
Zm00001d036709_P001	Maize	cytosol	27.59	26.99
Zm00001d039211_P006	Maize	cytosol	32.92	21.13
Zm00001d041945_P003	Maize	cytosol	25.08	18.82
Zm00001d011779_P005	Maize	cytosol	24.45	15.92
Zm00001d033309_P003	Maize	cytosol	22.57	14.91
Zm00001d033994_P002	Maize	mitochondrion, nucleus	23.51	14.79
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	18.18	11.58
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	22.57	10.03
Zm00001d026621_P006	Maize	cytosol	22.26	7.8
Zm00001d012620_P025	Maize	cytosol	20.06	7.67
Zm00001d001828_P033	Maize	cytosol	21.94	7.59
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	20.69	7.15

Protein Annotations

EntrezGene:100276374	MapMan:12.3.3.2.3	Gene3D:2.130.10.10	UniProt:B6T9K7	EMBL:EU961672	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009791	GO:GO:0010228	GO:GO:0016740	GO:GO:0032259
GO:GO:0042393	GO:GO:0048188	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM08779.1
PFAM:PF00400	PIRSF:PIRSF002394	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000182C39A	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d033849	EnsemblPlants:Zm00001d033849_P002
EnsemblPlants:Zm00001d033849_T002	SEG:seg	:	:	:	:

Description

COMPASS-like H3K4 histone methylase component WDR5A

Coordinates

chr1:-:275752106..275757102

Molecular Weight (calculated)

34549.7 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.145

Length

319 amino acids

Sequence
(BLAST)

001: MAAPVADDAS ASPGYVLRST LEGHRRAVST VKFSPDGRLL ASASADKLLR VWSSSDLTPV AELEGHGEGV SDLSFSPDGR LLASASDDRT VRIWDLAVGG
101: GARLVKTLTG HTNYAFCVSF SPHGNVLASG SFDETVRVWE VRSGKCLRVL PAHSEPVTAV DFDREGDMIV SGSYDGLCRV WDSATGHCVK TLIDDESPPV
201: SFAKFSPNGK FILAATLDST LRLWNFSAGK FLKTYTGHVN TKYCIPAAFS ITNSKYIVSG SEDKCVYLWD LQSRRIVQKL EGHTDTVIAV SCHPKENMIA
301: SGALDNDKTV KVWVQKEED

Best Arabidopsis Sequence Match ( AT3G49660.1 )
(BLAST)

001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE

Arabidopsis Description

WDR5AWDR5a [Source:UniProtKB/TrEMBL;Acc:A0A178VK59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.