Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU91573 | Sorghum | plastid | 81.91 | 86.5 |
| Os10t0494800-01 | Rice | cytosol | 59.91 | 63.2 |
| TraesCS1D01G161300.1 | Wheat | cytosol | 53.52 | 61.75 |
| HORVU1Hr1G061600.22 | Barley | cytosol | 53.63 | 60.96 |
| TraesCS1A01G164300.1 | Wheat | cytosol | 53.2 | 60.32 |
| TraesCS1B01G181100.1 | Wheat | cytosol | 53.52 | 59.95 |
| TraesCS1D01G151100.1 | Wheat | cytosol | 38.57 | 56.06 |
| Zm00001d033713_P002 | Maize | cytosol, extracellular, plastid | 23.19 | 42.71 |
| Zm00001d026621_P006 | Maize | cytosol | 38.24 | 38.79 |
| Zm00001d001828_P033 | Maize | cytosol | 38.24 | 38.29 |
| Zm00001d012620_P025 | Maize | cytosol | 31.96 | 35.37 |
| Zm00001d033849_P002 | Maize | extracellular, nucleus | 7.15 | 20.69 |
| Zm00001d021866_P001 | Maize | plastid | 7.26 | 20.43 |
| Zm00001d021868_P001 | Maize | plastid | 7.15 | 20.12 |
| Zm00001d036709_P001 | Maize | cytosol | 6.93 | 19.63 |
| Zm00001d046930_P001 | Maize | cytosol, extracellular, plasma membrane | 6.93 | 19.63 |
| Zm00001d050708_P002 | Maize | cytosol | 5.96 | 18.15 |
| Zm00001d041945_P003 | Maize | cytosol | 7.26 | 15.76 |
| Zm00001d033309_P003 | Maize | cytosol | 8.13 | 15.53 |
| Zm00001d039211_P006 | Maize | cytosol | 8.23 | 15.29 |
| Zm00001d033994_P002 | Maize | mitochondrion, nucleus | 7.48 | 13.61 |
| Zm00001d011779_P005 | Maize | cytosol | 6.93 | 13.06 |
| Zm00001d042091_P002 | Maize | cytosol, mitochondrion, nucleus, peroxisome, plastid | 8.67 | 11.14 |
Protein Annotations
| EntrezGene:103643412 | MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | UniProt:A0A1D6KS63 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal |
| InterPro:Katanin_bsu1 | HAMAP:MF_03022 | ProteinID:ONM05504.1 | PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF14 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI000843AF2A | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d032598 | EnsemblPlants:Zm00001d032598_P023 | EnsemblPlants:Zm00001d032598_T023 | SEG:seg | : |
Description
Transducin/WD40 repeat-like superfamily protein
Coordinates
chr1:+:231626306..231633543
Molecular Weight (calculated)
101538.0 Da
IEP (calculated)
6.310
GRAVY (calculated)
-0.184
Length
923 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAAIADGHY ARLQASYPVN CWFGDFEFEL EVGLLLTALF ELVVCFIENV AAGIMDSAAA EEFVAHTLNV NCAKFGRRAS RILITGGEDL KVNLWAIGKP
101: GALLSLSGFT SPVESVSFDS SEVTIGAGAA SGTIKIWNIE EAKVVRTFTG HRSSCASLDF HPFGEFLATG SSDTNMKIWD TRKKRCIHTY KGHTQRINVL
201: KFTPDGRWIV SGGADNSVMV WDLTAGKLMH DFCLHEGPVN CLDVHPYEFL LATGSVDKTV KFWDLETFEL IGSSGPENNR EYFELASAIR SMKFNSDGKT
301: IFCGLHESLK ALSWEPTICH DVIDVGWSTL ADLTVDEGKL LGCSYNQNCV GVWVVDLMRN EPYVDSSAGS HLNGSINRPI QSDDSMSSVF GRLSISRSPA
401: NEIGSDTLLG CSMSGSKESP VSTSASMRGL SKPPGKGDLR LSRSISTPLL SPRVRLNPNF IDRQKNQAAT AVPLPEPIVR FKANLSSDAG MLSRKSHASA
501: APMYRSRSNS SRYGIMESSS IPVLALRHSS RKDAGPVHSE AATGELADIE PQNIEKEGLV ANHGKEDGKL VPVIASRSSK IVEEVGYRRI TNDVGCKRVT
601: LESGLRVNSD MDYRSRAPES HEVQQLIHLS EPAGLHGKFI RESSGAGDNN CSGSICTESA EFNEVDIWYR VSGFDKWNPA AARNPEFASI HRNEVIGIRQ
701: LMESSGKYVV DDRPSSSNYD NIQYVTTLYS SRLHPSLSGK LSASASYEDD ISGLVENHQE FIHVMKSRLT KLEVVYRCWQ RNDIKGSIDA TWRMLDFAVT
801: NDIVNALMEN RNCITLDVCA SLLRLTTSLL ESTYDRHMSI ALRMILSFVK SFGPTISSAL LAIPPVGVDL EAEQRMEWCN LCFQELKNVS VSLKFLTRRQ
901: GEVGRLAQEL SLFLQDLFQL SSV
101: GALLSLSGFT SPVESVSFDS SEVTIGAGAA SGTIKIWNIE EAKVVRTFTG HRSSCASLDF HPFGEFLATG SSDTNMKIWD TRKKRCIHTY KGHTQRINVL
201: KFTPDGRWIV SGGADNSVMV WDLTAGKLMH DFCLHEGPVN CLDVHPYEFL LATGSVDKTV KFWDLETFEL IGSSGPENNR EYFELASAIR SMKFNSDGKT
301: IFCGLHESLK ALSWEPTICH DVIDVGWSTL ADLTVDEGKL LGCSYNQNCV GVWVVDLMRN EPYVDSSAGS HLNGSINRPI QSDDSMSSVF GRLSISRSPA
401: NEIGSDTLLG CSMSGSKESP VSTSASMRGL SKPPGKGDLR LSRSISTPLL SPRVRLNPNF IDRQKNQAAT AVPLPEPIVR FKANLSSDAG MLSRKSHASA
501: APMYRSRSNS SRYGIMESSS IPVLALRHSS RKDAGPVHSE AATGELADIE PQNIEKEGLV ANHGKEDGKL VPVIASRSSK IVEEVGYRRI TNDVGCKRVT
601: LESGLRVNSD MDYRSRAPES HEVQQLIHLS EPAGLHGKFI RESSGAGDNN CSGSICTESA EFNEVDIWYR VSGFDKWNPA AARNPEFASI HRNEVIGIRQ
701: LMESSGKYVV DDRPSSSNYD NIQYVTTLYS SRLHPSLSGK LSASASYEDD ISGLVENHQE FIHVMKSRLT KLEVVYRCWQ RNDIKGSIDA TWRMLDFAVT
801: NDIVNALMEN RNCITLDVCA SLLRLTTSLL ESTYDRHMSI ALRMILSFVK SFGPTISSAL LAIPPVGVDL EAEQRMEWCN LCFQELKNVS VSLKFLTRRQ
901: GEVGRLAQEL SLFLQDLFQL SSV
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDESPVT STRQAKTSPA PVTPVILNQR QTTNMKSDEP PVISTRPLRT SSARVMPVIL NQASTTYDER PLSSSRSART
0801: SPARIMPMKL NQADNMPSYE PPVALTRSAR NSPARVIPVK LNQATNVTAD ASHIRSRQRF SPTQTLATPA VFDQVTDMTL DETTKTQQSS DILTQKEEPQ
0901: ISGREDDGDI WEILMRTHSE VLNTLQSRLT KLQIVRHFWE RSDIKGAIAA LRKLSDHSVQ ADVINILTDK TEILTLDLFS QLAPVLTGLL GSKTERPVNV
1001: SLEMLLKLVA VFGTVIQSTV SARRVVGVDL HAEERLQICQ SCSAELQKVQ KILPLLTRRG GLIARKAQEL NLVLQTP
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.