Factsheet for Zm00001d041945_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	84.94	90.7
Os03t0685600-01	Rice	cytosol	76.24	82.23
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	71.06	76.07
Zm00001d011779_P005	Maize	cytosol	87.53	75.92
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	70.35	75.51
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	38.12	73.64
TraesCS1B01G374800.1	Wheat	cytosol	66.82	72.08
TraesCS1D01G363000.1	Wheat	cytosol	66.59	71.83
HORVU3Hr1G013230.4	Barley	cytosol	66.59	70.75
GSMUA_Achr11P...	Banana	cytosol	52.24	64.35
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	70.82	62.06
HORVU2Hr1G022250.4	Barley	mitochondrion	71.29	61.09
VIT_18s0164g00020.t01	Wine grape	nucleus	53.41	58.06
VIT_11s0016g02220.t01	Wine grape	cytosol	52.94	57.25
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	53.41	57.18
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	52.47	56.17
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	50.12	54.48
AT1G71840.1	Thale cress	nucleus	48.94	51.11
CDX68298	Canola	cytosol	46.35	50.64
CDX72834	Canola	cytosol	47.29	50.5
CDX96351	Canola	cytosol	46.82	49.87
CDY36678	Canola	cytosol	45.65	49.87
Bra016111.1-P	Field mustard	cytosol	46.35	49.37
KRH35009	Soybean	cytosol	16.0	49.28
Bra003910.1-P	Field mustard	cytosol	43.29	48.68
KRH37298	Soybean	cytosol	42.35	47.49
HORVU5Hr1G075920.16	Barley	nucleus	44.94	25.99
Zm00001d033849_P002	Maize	extracellular, nucleus	18.82	25.08
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	18.59	24.23
Zm00001d036709_P001	Maize	cytosol	18.59	24.23
Zm00001d021866_P001	Maize	plastid	16.71	21.65
Zm00001d021868_P001	Maize	plastid	16.71	21.65
Zm00001d050708_P002	Maize	cytosol	13.65	19.14
Zm00001d039211_P006	Maize	cytosol	18.59	15.9
Zm00001d033309_P003	Maize	cytosol	16.94	14.91
Zm00001d033994_P002	Maize	mitochondrion, nucleus	15.06	12.62
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	13.65	11.58
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	16.71	9.89
Zm00001d012620_P025	Maize	cytosol	15.53	7.91
Zm00001d001828_P033	Maize	cytosol	16.24	7.48
Zm00001d026621_P006	Maize	cytosol	15.76	7.36
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	15.76	7.26

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6MZY2	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM34130.1	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000843DCB7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d041945	EnsemblPlants:Zm00001d041945_P003	EnsemblPlants:Zm00001d041945_T003	SEG:seg

Description

transducin family protein / WD-40 repeat family protein

Coordinates

chr3:-:144768210..144772513

Molecular Weight (calculated)

45538.8 Da

IEP (calculated)

4.416

GRAVY (calculated)

-0.151

Length

425 amino acids

Sequence
(BLAST)

001: MSISEELPGE GSDGEEEVFI NEEDIIHEIT IDEEDLPDRD DEDDDVVNGM GRGGFCLELQ LSVYASVSLS VFSIYSPLIP KTSMILHTHF KATKANEVFI
101: VACSPTDSSL VASGGKDDRG FLWRIGSEEG ALELTGHKDT VGTVAFSSDG NLLACGSFDG QINVWNTATR TLKGTLEGSG SGFEWLKWHS RGHLIIAGSE
201: DCNVWMWNAD HNAILNTFAG HSNTVTCGDF TPDGKLICTG SDDASLRIWD PRSAQSRHVV RGHGYHSDGL TCLSMTSDSQ TVVSGSKDSS VHIVNLNSGQ
301: VVGSLAGHTN SIECLGISSS YGWVATGSMD QKLIIWDLTH QSSRCICEHD EGVTSLTWLG SSRYVASGCI DGKVRIWDSL SGACAREFSG HADVVQSLAI
401: TADGNTMVSA SSDGSARVFD ISMFK

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.