Factsheet for GSMUA_Achr11P12790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g02220.t01	Wine grape	cytosol	68.12	59.8
VIT_18s0164g00020.t01	Wine grape	nucleus	67.54	59.59
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	37.68	59.09
Os03t0685600-01	Rice	cytosol	66.96	58.63
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	65.22	56.68
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	65.22	56.53
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	63.77	55.42
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	62.61	55.24
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	61.45	53.54
AT1G71840.1	Thale cress	nucleus	62.9	53.32
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	61.16	53.15
KRH35009	Soybean	cytosol	21.16	52.9
Zm00001d041945_P003	Maize	cytosol	64.35	52.24
CDX72834	Canola	cytosol	59.71	51.76
CDX68298	Canola	cytosol	57.97	51.41
Bra016111.1-P	Field mustard	cytosol	59.13	51.13
CDY36678	Canola	cytosol	57.39	50.9
CDX96351	Canola	cytosol	58.84	50.88
TraesCS1B01G374800.1	Wheat	cytosol	57.68	50.51
HORVU3Hr1G013230.4	Barley	cytosol	58.55	50.5
TraesCS1D01G363000.1	Wheat	cytosol	57.39	50.25
Bra003910.1-P	Field mustard	cytosol	54.78	50.0
KRH37298	Soybean	cytosol	51.3	46.7
Zm00001d011779_P005	Maize	cytosol	64.35	45.31
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	60.29	42.89
HORVU2Hr1G022250.4	Barley	mitochondrion	60.58	42.14
GSMUA_Achr8P10200_001	Banana	cytosol	5.8	22.47
GSMUA_Achr7P01850_001	Banana	plastid	14.78	21.79
GSMUA_Achr2P08580_001	Banana	cytosol	17.39	21.13
HORVU5Hr1G075920.16	Barley	nucleus	44.06	20.68
GSMUA_Achr3P04370_001	Banana	cytosol	19.13	20.5
GSMUA_Achr8P28660_001	Banana	cytosol	20.0	20.47
GSMUA_Achr6P13100_001	Banana	cytosol	17.97	20.39
GSMUA_Achr4P10720_001	Banana	cytosol, plastid	19.71	20.18
GSMUA_Achr8P10210_001	Banana	cytosol	4.93	17.89
GSMUA_Achr3P29050_001	Banana	nucleus	22.32	16.11
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	22.61	16.05
GSMUA_Achr2P06000_001	Banana	cytosol	19.71	14.35
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	3.48	12.77
GSMUA_Achr3P27210_001	Banana	golgi	17.1	12.47
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	9.28	11.59
GSMUA_Achr4P29380_001	Banana	nucleus	19.13	9.28
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	18.26	7.94
GSMUA_Achr1P08830_001	Banana	cytosol	18.84	6.71
GSMUA_Achr9P23740_001	Banana	golgi	18.55	6.11
GSMUA_Achr3P27200_001	Banana	golgi, plasma membrane, vacuole	4.64	4.31

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	EnsemblPlantsGene:GSMUA_Achr11G12790_001
EnsemblPlants:GSMUA_Achr11P12790_001	EnsemblPlants:GSMUA_Achr11T12790_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0RRQ9
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19857
PANTHER:PTHR19857:SF8	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029635EE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

Putative Angio-associated migratory cell protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G12790_001]

Coordinates

chr11:+:12041963..12045729

Molecular Weight (calculated)

36793.3 Da

IEP (calculated)

5.826

GRAVY (calculated)

0.045

Length

345 amino acids

Sequence
(BLAST)

001: MFFISMCHHK MRTCINELYT VACNPTDASL VATGGKDDRG FLWKIGAADA SLELQGHQDT VSTVAFSFDG QLLATGGFDG LIHVWDASSG SLKCTLEGSG
101: DGFEWLRWHP KGHLIIAGSE DTNVYMWNAD KSICLNTFSG HASSVTCGDF TPDGKLICTG SDDASLRIWN PKTGESVHIV RGHPYHTDGL TCLSITSDST
201: IAITGSKDSS IHLVNITTGR VISSLIAHSK SVECIGLTPS SPWAATGSMD QKLIIWDLQR SSVRCACNHE EGVTCLAWLG ASQFVATGCV NGKVCVWDSL
301: SGNCVKIFSG HTDTVQSLAL SADGNSLVSV SDDGTARVFV VSEFR

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.